PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G200500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 752aa MW: 82441.8 Da PI: 4.5041 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.2 | 1e-11 | 596 | 636 | 12 | 52 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L e+F+ ++yps++ +e LA++lgLt rqV+ WF rR Sobic.009G200500.2.p 596 SQKLYEHFKTQQYPSRSVKESLAEELGLTFRQVSKWFESRR 636 5789***********************************99 PP | |||||||
2 | PHD | 45.3 | 2e-15 | 233 | 288 | 1 | 51 |
SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg++d+ +++++lCdg C++ fH++Cl+++l++e++p+g wlC+ C++k Sobic.009G200500.2.p 233 FCATCGSNDAtlGNDIILCDGaCDRGFHQNCLNPPLRTEDIPMGdeGWLCPACDCK 288 7******55556********66**********************99*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.71E-13 | 223 | 291 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 4.1E-13 | 230 | 287 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 11.288 | 231 | 288 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 1.1E-12 | 233 | 288 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.9E-11 | 233 | 286 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 7.54E-27 | 233 | 285 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 234 | 285 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 577 | 636 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.394 | 582 | 642 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-11 | 585 | 646 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-11 | 587 | 637 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.40E-11 | 591 | 636 | No hit | No description |
Pfam | PF00046 | 4.0E-9 | 596 | 636 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MEKNTVHCPV EGNGEIENGA SSSQNPETVC PVEGNGEIEN GASSGQNPET LEHPVLLSTS 60 QTVPNNLGIR KNYKRTANRG KKGSQGLTRQ AYTLRSSDND VRVLRSTSSS KTTPTEHVQT 120 PVQPAAKRRK RSRASNKSST DEFSQIRKRI RYILNRMNYE QSLIEAYASE GWKNQSLDKL 180 RPEKELERAK SEILRCKLRI REVFQNIDSL LSKGKIDESL FDSEGEISCE DIFCATCGSN 240 DATLGNDIIL CDGACDRGFH QNCLNPPLRT EDIPMGDEGW LCPACDCKID CIDLLNDLQG 300 SDLSIEDSWE KVFPEAAAMA NGSKQDDTFD LPSDDSDDND FDPNMPEEHV VSKEEGSSED 360 EEDEDGGSDS DDSDFLTCSD DSEPLMDKKK VDDLGLPSED SEDDDYDPAG PDSDKDDEKK 420 LSSDESDFSS DSDDFCKEIA KSGGHEEVSS PPLPDAKVGD MEKSTAQANA ASSADDPMET 480 EIDQSVVLPV SRRRQAERLD YKKLYDEAYG EASSDSSDDE EWSGKNTPIK SNEEGEADSP 540 AGKGSRVVHH DNELTTQSTK RSLHSLRGSV DEKHGDLTSN GSNSAARKGQ FGPVVSQKLY 600 EHFKTQQYPS RSVKESLAEE LGLTFRQVSK WFESRRHFAK VASSRKGITP DKHSPENTNS 660 PVTPSMQPKE PEGTVMEESN VCINRDATIS KKAASSKVGS RKNLGKNSPG SDVGGSKVDS 720 AEDQNPGPDL AAEKARQKAV QQELKKKKMG R* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts with the shrunken (SHR) 26 bp feedback control element. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G200500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X67561 | 0.0 | X67561.1 Z.mays Zmhox1a mRNA for homeobox protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440088.2 | 0.0 | homeobox protein HOX1A | ||||
Swissprot | P46605 | 0.0 | HOX1A_MAIZE; Homeobox protein HOX1A | ||||
TrEMBL | A0A1B6P9P1 | 0.0 | A0A1B6P9P1_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G094935_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 2e-85 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G200500.2.p |
Publications ? help Back to Top | |||
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