PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G200500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HB-PHD
Protein Properties Length: 752aa    MW: 82441.8 Da    PI: 4.5041
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G200500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.21e-115966361252
                           HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
              Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                            + L e+F+ ++yps++ +e LA++lgLt rqV+ WF  rR
  Sobic.009G200500.1.p 596 SQKLYEHFKTQQYPSRSVKESLAEELGLTFRQVSKWFESRR 636
                           5789***********************************99 PP
2PHD45.32e-15233288151
                           SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                   PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                           +C+ Cg++d+  +++++lCdg C++ fH++Cl+++l++e++p+g   wlC+ C++k
  Sobic.009G200500.1.p 233 FCATCGSNDAtlGNDIILCDGaCDRGFHQNCLNPPLRTEDIPMGdeGWLCPACDCK 288
                           7******55556********66**********************99*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.71E-13223291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.1E-13230287IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.288231288IPR019787Zinc finger, PHD-finger
PfamPF006281.1E-12233288IPR019787Zinc finger, PHD-finger
SMARTSM002491.9E-11233286IPR001965Zinc finger, PHD-type
CDDcd155047.54E-27233285No hitNo description
PROSITE patternPS013590234285IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.7E-12577636IPR009057Homeodomain-like
PROSITE profilePS5007113.394582642IPR001356Homeobox domain
SMARTSM003893.0E-11585646IPR001356Homeobox domain
SuperFamilySSF466898.98E-11587637IPR009057Homeodomain-like
CDDcd000865.40E-11591636No hitNo description
PfamPF000464.0E-9596636IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MEKNTVHCPV EGNGEIENGA SSSQNPETVC PVEGNGEIEN GASSGQNPET LEHPVLLSTS  60
QTVPNNLGIR KNYKRTANRG KKGSQGLTRQ AYTLRSSDND VRVLRSTSSS KTTPTEHVQT  120
PVQPAAKRRK RSRASNKSST DEFSQIRKRI RYILNRMNYE QSLIEAYASE GWKNQSLDKL  180
RPEKELERAK SEILRCKLRI REVFQNIDSL LSKGKIDESL FDSEGEISCE DIFCATCGSN  240
DATLGNDIIL CDGACDRGFH QNCLNPPLRT EDIPMGDEGW LCPACDCKID CIDLLNDLQG  300
SDLSIEDSWE KVFPEAAAMA NGSKQDDTFD LPSDDSDDND FDPNMPEEHV VSKEEGSSED  360
EEDEDGGSDS DDSDFLTCSD DSEPLMDKKK VDDLGLPSED SEDDDYDPAG PDSDKDDEKK  420
LSSDESDFSS DSDDFCKEIA KSGGHEEVSS PPLPDAKVGD MEKSTAQANA ASSADDPMET  480
EIDQSVVLPV SRRRQAERLD YKKLYDEAYG EASSDSSDDE EWSGKNTPIK SNEEGEADSP  540
AGKGSRVVHH DNELTTQSTK RSLHSLRGSV DEKHGDLTSN GSNSAARKGQ FGPVVSQKLY  600
EHFKTQQYPS RSVKESLAEE LGLTFRQVSK WFESRRHFAK VASSRKGITP DKHSPENTNS  660
PVTPSMQPKE PEGTVMEESN VCINRDATIS KKAASSKVGS RKNLGKNSPG SDVGGSKVDS  720
AEDQNPGPDL AAEKARQKAV QQELKKKKMG R*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots.
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G200500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX675610.0X67561.1 Z.mays Zmhox1a mRNA for homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440088.20.0homeobox protein HOX1A
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A1B6P9P10.0A0A1B6P9P1_SORBI; Uncharacterized protein
STRINGGRMZM2G094935_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-85Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]