PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G199300.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 333aa MW: 34726.3 Da PI: 6.779

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G199300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.1	2.1e-26	27	128	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 +C++C+ lr++C+++C+++p++ p++q +++ +++k++G++ +l+l++a+p +++++sl+yeA+ r+ +PvyGavg+++++ Sobic.009G199300.1.p 27 SCNGCRALRKGCSDGCTIRPCLqwiksPEAQGNATHFLAKFYGRAGLLNLIAAAPAGAdCQAVFRSLLYEACGRIVNPVYGAVGLLWSG 115 6***************************************************988769************************* PP DUF260 84 qqqleqlkaelal 96 q+ ++ ++e+a Sobic.009G199300.1.p 116 QWPKCEDAVEAAF 128 99999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.301	26	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-20	27	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MVPMSGSGST SGTGGGGAAK THRMVTSCNG CRALRKGCSD GCTIRPCLQW IKSPEAQGNA 60 THFLAKFYGR AGLLNLIAAA PAGADCQAVF RSLLYEACGR IVNPVYGAVG LLWSGQWPKC 120 EDAVEAAFKG ELGVPVHVVH VDAPPPPLGA RLGPSSASYD IRHFAKDSDA AVAADLLRFA 180 RAAGRTGFKR GKGSPSYGSK AKLLKGNGEA TKNVRASPSG SPPLGQQQEV AKELEPMPMV 240 MEMELEHDGR RDEDNDHHLK GKGSKENTDV EAAAFHVIQG EAEPPLGNQV LVADQEEEVV 300 VPGLELALGF EPVPVVRQQP SGDQTGSSGL GL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.2660	4e-83	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G199300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441387.1	0.0	uncharacterized protein LOC8067520
TrEMBL	A0A1B6P9L0	0.0	A0A1B6P9L0_SORBI; Uncharacterized protein
STRING	Sb09g025700.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-56	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Sobic.009G199300.1.p