PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G195000.3.p | ||||||||
Common Name | Sb09g025340, SORBIDRAFT_09g025340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 269aa MW: 28217.7 Da PI: 8.2937 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.1 | 2.7e-29 | 59 | 132 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....s 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ Sobic.009G195000.3.p 59 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQaqdlvA 132 78*************************************************************99888222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-26 | 60 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.688 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MISGNLTNEE LGAGCTKAEG PTAGSGAGAV VAKSPVLSSS RHWPPSTESR IVRVSRVFGG 60 KDRHSKVRTV KGLRDRRVRL SVPTAIQLYD LQDRLGLSQP SKVVDWLLDA AQHEIDKLPP 120 LQFPPQAQDL VAHLPPSMVA PFSNVAAAAD RAAAANASAA AMADGDKRHC HGGGIKGLMG 180 LNNSIGLVNA TMPLAHGLYY TPAGESWTTN GNNAAVHDHQ LVFYSPEGGG FAMKEAADHQ 240 FPVDSLEHSQ GQLSLSSARS FLHPGNQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G195000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304104.1 | 0.0 | transcription factor PCF8 isoform X2 | ||||
TrEMBL | A0A1Z5R3E9 | 0.0 | A0A1Z5R3E9_SORBI; Uncharacterized protein | ||||
STRING | Sb09g025340.1 | 1e-178 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G195000.3.p |
Entrez Gene | 8080107 |