PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G195000.1.p | ||||||||
Common Name | Sb09g025340, SORBIDRAFT_09g025340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 299aa MW: 31249.1 Da PI: 8.3201 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.3 | 2.4e-29 | 59 | 135 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........s 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ Sobic.009G195000.1.p 59 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQaqdlvahlP 135 78*************************************************************88888322222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.688 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.7E-27 | 60 | 123 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MISGNLTNEE LGAGCTKAEG PTAGSGAGAV VAKSPVLSSS RHWPPSTESR IVRVSRVFGG 60 KDRHSKVRTV KGLRDRRVRL SVPTAIQLYD LQDRLGLSQP SKVVDWLLDA AQHEIDKLPP 120 LQFPPQAQDL VAHLPPSMVA PFSNVAAAAD RAAAANASAA AMADGDKRHC HGGGIKGLMG 180 LNNSIGLVNA TMPLAHGLYY TPAGESWTTN GNNAAVHDHQ VSHHGTSPQT TVAHHSPFSS 240 LLSLAAPGPQ LVFYSPEGGG FAMKEAADHQ FPVDSLEHSQ GQLSLSSARS FLHPGNQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G195000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440063.1 | 0.0 | transcription factor PCF8 isoform X1 | ||||
Refseq | XP_021304103.1 | 0.0 | transcription factor PCF8 isoform X1 | ||||
TrEMBL | C5Z0W3 | 0.0 | C5Z0W3_SORBI; Uncharacterized protein | ||||
STRING | Sb09g025340.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G195000.1.p |
Entrez Gene | 8080107 |