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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.009G187500.1.p |
| Common Name | Sb09g024690, SORBIDRAFT_09g024690 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRAS |
| Protein Properties |
Length: 425aa MW: 45339.4 Da PI: 6.2458 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G187500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 275.9 | 1.2e-84 | 33 | 422 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs...elykalppsetseknsseelaalkl..fs 85
++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar r + ++ +a ++ + ++ ++++++++l +
Sobic.009G187500.1.p 33 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACRLCGpagTIQAAAAAGAPAP--RERAMSVTELaeYI 119
699***********************************************99994430112333333333333..333344444466** PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAee 171
+++P+++f++ + N +Il+av+g+ +vH++D++++ ++QWp+L++ L++Rp+gpp lRiT+ ++ ++ + ee+g rLa+fA++
Sobic.009G187500.1.p 120 DLTPWHRFGFTASNGTILRAVAGSAAVHVVDLSVTRCMQWPTLIDMLSKRPGGPPALRITVPSARPAVppqLGVSDEEIGLRLANFAKS 208
************************************************************999866668655566799*********** PP
GRAS 172 lgvpfefnvl.................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
gv++ef+v+ ++++l+++ + ++L+++ gEal+Vn++ + ++ + rd++L++v+ l+P +v+v
Sobic.009G187500.1.p 209 KGVQLEFSVVqcaspsptssppkkqaaLCQDLASVlsNRQSLELRDGEALVVNCQSWIRHVA------PGSRDAFLDAVRALNPCLVTV 291
*****************99999887765566655577999****************999997......555788*************** PP
GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
++++ad++s+s+++r++ ++++++ lfd+l++++pr+s r+ E++ +gr+i++vv + a+ er e+ ++ er+++ GF +v ++
Sobic.009G187500.1.p 292 TDEDADLDSPSLATRIAGCFDFHWILFDALDTSAPRDSPRRVEHEAA-VGRKIESVVGADDADGAERAESGARLAERMRRNGFASVGFD 379
********************************************999.***************************************** PP
GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
e+aa+++++ll++++ g+ v+ e++ lvl+Wk++ v +SaW+
Sobic.009G187500.1.p 380 EEAAAEVRRLLSEHA-TGWGVKREEDMLVLTWKGHGAVYTSAWT 422
***************.99*************************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MEQELRTGGG GNLRAAHSSV CFSGALIDGP RIQQLLLHCA AALESNDVTL AQQAMWVLNN 60
IASSQGDPSQ RLTSWLLRAL VARACRLCGP AGTIQAAAAA GAPAPRERAM SVTELAEYID 120
LTPWHRFGFT ASNGTILRAV AGSAAVHVVD LSVTRCMQWP TLIDMLSKRP GGPPALRITV 180
PSARPAVPPQ LGVSDEEIGL RLANFAKSKG VQLEFSVVQC ASPSPTSSPP KKQAALCQDL 240
ASVLSNRQSL ELRDGEALVV NCQSWIRHVA PGSRDAFLDA VRALNPCLVT VTDEDADLDS 300
PSLATRIAGC FDFHWILFDA LDTSAPRDSP RRVEHEAAVG RKIESVVGAD DADGAERAES 360
GARLAERMRR NGFASVGFDE EAAAEVRRLL SEHATGWGVK REEDMLVLTW KGHGAVYTSA 420
WTPN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727002 | 0.0 | KJ727002.1 Zea mays clone pUT3978 GRAS transcription factor (GRAS62) gene, partial cds. |
