PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G184300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 22449.4 Da PI: 10.6091 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.3e-19 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r +r++lg+++t+ eAa a+++a+ +l+g Sobic.009G184300.1.p 49 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAAMAYDRAAVALRG 98 6********.**********88.....45************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.32E-28 | 48 | 105 | No hit | No description |
SMART | SM00380 | 6.2E-34 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-30 | 49 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.891 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 49 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-12 | 49 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDWDMRGGGG GHGGAVGDGG GGPGGRGLTV GGVAVGGGGD QHQQRVEAHY RGVRKRPWGR 60 YAAEIRDPWR KTRVWLGTYD TPVEAAMAYD RAAVALRGSK ARLNFTAGRG ACPRATPVQA 120 RPFPLSHPAA PGGHFVGGLD VTHSSPWHVL YLPPSRLHHQ AVAVPPPMPP LVAVAEDVVA 180 SSKPSTALEL RTGPKALPFD LNEPPSLMFG SRSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 49 | 105 | 5 | 62 | ATERF1 |
3gcc_A | 2e-20 | 49 | 105 | 5 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.400 | 6e-32 | ovary |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G184300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441318.2 | 1e-151 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A1B6P959 | 1e-149 | A0A1B6P959_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G066158_P01 | 1e-91 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-29 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G184300.1.p |