PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G180500.1.p | ||||||||
Common Name | Sb09g024090, SORBIDRAFT_09g024090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 266aa MW: 29416.1 Da PI: 6.6361 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.7 | 1.1e-32 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl Sobic.009G180500.1.p 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.742 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-31 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.85E-17 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-25 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-7 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.3E-24 | 132 | 177 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MMYHAKNFSV PFAQQRAQNN EHASNIGGIG GPNVSNPANP VGSGKQRLRW TSDLHNRFVD 60 AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKDEKKDSSD 120 SLSNTDSAPG LQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGRYLQM IIEEQQKLGG 180 SIKASEDQKL SDSPPSLDDY PESMQPSPKK PRIDALSPDS ERDRTQPEFE SHLMGPWDQE 240 ICAKNICGVA FPVEEFKADP GMSKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G180500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975261 | 0.0 | EU975261.1 Zea mays clone 485946 MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441302.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 4e-74 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | C5Z088 | 0.0 | C5Z088_SORBI; Uncharacterized protein | ||||
STRING | Sb09g024090.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 9e-55 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G180500.1.p |
Entrez Gene | 8064173 |