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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.009G177100.1.p |
| Common Name | Sb09g023750, SORBIDRAFT_09g023750 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRAS |
| Protein Properties |
Length: 494aa MW: 51856.7 Da PI: 6.4294 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G177100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 276.1 | 1.1e-84 | 110 | 481 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
+ lL+e A avs g+l+ a+++L +l ++asp++ + +Rl+ayft+ALaarl++s+ ++++ l+p ++ + aa+++f++vsP
Sobic.009G177100.1.p 110 IALLMESAVAVSVGNLADANSMLLELAQMASPYAsSCGERLVAYFTKALAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSP 192
689*******************************66779**********************888776665......678899******* PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
+ +f++l++NqaIlea++g++ vHi+D+d+ G lQW++Ll aLa+Rp+gpp lR+Tg+g s+ +l+ tg++La +A++l++pf
Sobic.009G177100.1.p 193 FARFAYLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVLRVTGFGM----SRSALHDTGNQLAGLASKLNMPF 277
******************************988447**************************....9********************** PP
GRAS 177 efnvlvakrledl....eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......... 251
ef ++ akr d+ + ++ ++ gEalaV++ h l+d ++ +++lv+ l+Pkv+++veqe ++
Sobic.009G177100.1.p 278 EFYAI-AKRPGDVvvgaAVADMPSRRpGEALAVHWLR--HALYDAAGDDGA----TMQLVQWLEPKVLTLVEQERAGAAPgdvgggggd 359
****6.665555524444444444335********98..888855555555....*******************544333445666777 PP
GRAS 252 ..sFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
Fl+rf++al++ysalfdsl a+ p+e r+ vE+ +lgrei nv+a g +r r + ++ W+e l + GF + + a
Sobic.009G177100.1.p 360 hgHFLDRFVSALHHYSALFDSLGASRPSELdASRHLVEQGVLGREIGNVLAVGGPSRSGRGK-FGCWQEELARHGFLRAGG----VGRA 443
78********************88877776599***********************999977.*************77665....5556 PP
GRAS 338 klllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
+l+ ++ + gy+v ++++ v lgWk+ pL++vS W
Sobic.009G177100.1.p 444 QLVAGACPaGLGYTVADDHHGTVrLGWKGTPLYAVSTW 481
677777877888****88776666************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MQDSLSLMQF HDPYLYSGSA GSANLPLSHP FSPHHHQGFV DNCTGKDVAE FVDPATTTAA 60
EVSSDEQELA VSKEVSEGGG GGAVVVEVEE RNDATTARGG ELEAHGVRMI ALLMESAVAV 120
SVGNLADANS MLLELAQMAS PYASSCGERL VAYFTKALAA RLMSSWVGIC APLAPPCAAV 180
HAAFRAFYNV SPFARFAYLA CNQAILEAFH GKRLVHIVDL DVVPGGALQW LSLLPALAAR 240
PGGPPVLRVT GFGMSRSALH DTGNQLAGLA SKLNMPFEFY AIAKRPGDVV VGAAVADMPS 300
RRPGEALAVH WLRHALYDAA GDDGATMQLV QWLEPKVLTL VEQERAGAAP GDVGGGGGDH 360
GHFLDRFVSA LHHYSALFDS LGASRPSELD ASRHLVEQGV LGREIGNVLA VGGPSRSGRG 420
KFGCWQEELA RHGFLRAGGV GRAQLVAGAC PAGLGYTVAD DHHGTVRLGW KGTPLYAVST 480
WAWCPSPHGQ AHR*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726962 | 0.0 | KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds. |
