PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G172000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 847aa    MW: 96249.7 Da    PI: 9.7016
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G172000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.51.8e-17173252190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ evGF +r+s+ +++  n  +tk++++Cs+eg +++ k +         + rtgCka++++ + kd+ w++++  +eHnH+l
  Sobic.009G172000.1.p 173 EFYNLYSWEVGFGIRTSRGRTN-SNSYTTKKDLCCSCEGMSRNPKAA---------SCRTGCKAMIRLLRLKDHSWYISRSITEHNHSL 251
                           6****************99988.6666*************9998766.........9*******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.009G172000.1.p 252 S 252
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-13173252IPR004330FAR1 DNA binding domain
PfamPF105512.5E-28374466IPR018289MULE transposase domain
PROSITE profilePS509669.829655689IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-5660688IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-4664691IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MHVYNKEANG WVFPGMDPKE NWRKCATESL GLASMFDTAS TAAVLAATCG EGAWADETFR  60
RDSGEVDGFG GRLNGPPMVV GNEGDTGEQG GIGSSTVTMQ ATGGAPAGRN ERLTTSYDCK  120
KRKRGMSGPD AKIAPTEESA LSRAIKSSID RKSEAIFFPY EGTRFNSFEE AKEFYNLYSW  180
EVGFGIRTSR GRTNSNSYTT KKDLCCSCEG MSRNPKAASC RTGCKAMIRL LRLKDHSWYI  240
SRSITEHNHS LSATCGEKKQ WLSHSEIDPL TKDFIRKLRE NNVTTGRVCN ILGTSRGVGG  300
FPVRREVIRS VCARLAQHNI EDDISKTLTL LDKMKVDDPM MVVRYKVDEG GRIVHMLWCT  360
GKNQQNYDRF GDAMTFDTTY RTNLYNMPFG LFVGVNNHFQ SVVFGGVLLT SEKTEDFEWA  420
FANFKDIMKG KEPMTILTDQ CQGMAAAIKT TLQTSRHRWC KWHVLRKAKQ WLGNVYTKNT  480
GFKSEFNKLV TEEVSIIKFE RRWRQLVRKY GVEKNKYLKR IYKHRGMWAR PYFMHVFCAG  540
MTSTQRSESA NHMLKGFIQR SAPMHIFVSK FNEFQNDRIA QEEKEIHVTK QMKRKRRIGV  600
PIERHAEEIY TRAMYDRLYN ELYHAGSYLI KGRGADEAYI LVHYKEDGAT DEKLFLVKDS  660
GNFISCSCGL YNHVGMLCRH ALKVLMHLDR TELPSGNILA RWRRDVACET GHVSGQGVET  720
SSLESATYIQ KKLMVRRVLA MAGVEGTLDE SGYKEAMDAL DKIISVRTTR VEEKKIELGE  780
RSEKPTSCPK RAVKKGRRQN TSLKSYKASL KEQNKRKKYE EDEISSTSDN EQVTGTRKTK  840
ALWEIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G172000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321752.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1B6P9500.0A0A1B6P950_SORBI; Uncharacterized protein
STRINGSb08g016320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-75FAR1-related sequence 5