PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G155050.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 451aa MW: 49581.7 Da PI: 6.5771 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37 | 7.6e-12 | 127 | 156 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.009G155050.5.p 127 AKTERRLAQNREAARKSRLRKKAYVQQLET 156 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-4 | 124 | 200 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 126 | 168 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.1E-9 | 127 | 157 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-7 | 128 | 169 | No hit | No description |
SuperFamily | SSF57959 | 3.3E-7 | 128 | 170 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 131 | 146 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.7E-28 | 208 | 283 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MIGSDVDTEC KTAGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTTD SSSGQNSMPQ 60 TELVSPGSMR ADSGQRQEVL MVTVDDYNYE QGLGAAATTA QIFQQHAAGQ DKGKHGSTRK 120 DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELHG ARSQGLFPGG 180 GGAPGDLSSG AVIFDMEYAR WLEDDTKHMT ELQAVLQPQI IDANLGAIVE ECMRHYDELF 240 HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT EPQLLGMYNL 300 QRSSEQTEEA LGQGLQQLHQ SLADAVGASP LSDGANVANY TALMALALDR LDTLESFYRQ 360 ADSLRQQTLH QMRRILTTRQ TARCFLSISE YHRRLRALSS VWASRPPTES SVAAAAAAAG 420 AENVSPATGT TSEQAALRPY NHQSQQFPGF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G155050.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968847 | 0.0 | EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302621.1 | 0.0 | transcription factor TGAL5 isoform X4 | ||||
Refseq | XP_021302622.1 | 0.0 | transcription factor TGAL5 isoform X4 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | A0A1Z5R3S9 | 0.0 | A0A1Z5R3S9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G000842_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-107 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G155050.5.p |
Publications ? help Back to Top | |||
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