PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G155050.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 451aa    MW: 49581.7 Da    PI: 6.5771
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G155050.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1377.6e-12127156433
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                            k err+++NReAAr+sR+RKka++++Le+
  Sobic.009G155050.4.p 127 AKTERRLAQNREAARKSRLRKKAYVQQLET 156
                           799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-4124200IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232126168IPR004827Basic-leucine zipper domain
PfamPF001707.1E-9127157IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-7128169No hitNo description
SuperFamilySSF579593.3E-7128170No hitNo description
PROSITE patternPS000360131146IPR004827Basic-leucine zipper domain
PfamPF141441.7E-28208283IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MIGSDVDTEC KTAGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTTD SSSGQNSMPQ  60
TELVSPGSMR ADSGQRQEVL MVTVDDYNYE QGLGAAATTA QIFQQHAAGQ DKGKHGSTRK  120
DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELHG ARSQGLFPGG  180
GGAPGDLSSG AVIFDMEYAR WLEDDTKHMT ELQAVLQPQI IDANLGAIVE ECMRHYDELF  240
HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT EPQLLGMYNL  300
QRSSEQTEEA LGQGLQQLHQ SLADAVGASP LSDGANVANY TALMALALDR LDTLESFYRQ  360
ADSLRQQTLH QMRRILTTRQ TARCFLSISE YHRRLRALSS VWASRPPTES SVAAAAAAAG  420
AENVSPATGT TSEQAALRPY NHQSQQFPGF *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G155050.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688470.0EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302621.10.0transcription factor TGAL5 isoform X4
RefseqXP_021302622.10.0transcription factor TGAL5 isoform X4
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A1Z5R3S90.0A0A1Z5R3S9_SORBI; Uncharacterized protein
STRINGGRMZM2G000842_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-107bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]