PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G154300.1.p

Common Name

Sb09g021780, SORBIDRAFT_09g021780

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 270aa MW: 29711 Da PI: 5.2391

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G154300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.5	1.4e-41	4	136	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 l+pGfrF Pt+eel+++yL++k++g++ ++e+vi+ +d++ ++Pw+L + +++++e+ w++F++r++++a+g r++r+t sgyW Sobic.009G154300.1.p 4 LAPGFRFYPTEEELICFYLRNKLSGTRcGDIERVIPVADVCALDPWELSAaahraAYSGNEEPWFYFCPRQEREARGGRPSRTTPSGYW 92 579**********************5566778**********844566444447779********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ka g+ v++++g+ +g+kkt+vfy+grap g kt+W ++ey+ Sobic.009G154300.1.p 93 KAAGTPGLVYAADGRPIGTKKTMVFYRGRAPAGAKTKWKLNEYK 136 *****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-45	2	175	IPR003441	NAC domain
PROSITE profile	PS51005	45.721	4	175	IPR003441	NAC domain
Pfam	PF02365	2.4E-22	6	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MAELAPGFRF YPTEEELICF YLRNKLSGTR CGDIERVIPV ADVCALDPWE LSAAAHRAAY 60 SGNEEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120 RAPAGAKTKW KLNEYKAFEY EYDDDDATAV AAHPAPPSHA LQTRSEYSLC RLYTKSGCPR 180 QFDRRPSTAT AAAAGGSGGE NLAPSVALPQ TGPKRKRAAP SDDTYSSYDD GDDVPTQQRL 240 RLAQRGTGDG EVLIEDDMAD WSEFLDDWI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-28	4	139	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-28	4	139	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-28	4	139	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-28	4	139	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	3e-28	4	139	20	147	NAC domain-containing protein 19
3swm_B	3e-28	4	139	20	147	NAC domain-containing protein 19
3swm_C	3e-28	4	139	20	147	NAC domain-containing protein 19
3swm_D	3e-28	4	139	20	147	NAC domain-containing protein 19
3swp_A	3e-28	4	139	20	147	NAC domain-containing protein 19
3swp_B	3e-28	4	139	20	147	NAC domain-containing protein 19
3swp_C	3e-28	4	139	20	147	NAC domain-containing protein 19
3swp_D	3e-28	4	139	20	147	NAC domain-containing protein 19
4dul_A	2e-28	4	139	17	144	NAC domain-containing protein 19
4dul_B	2e-28	4	139	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G154300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303937.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-61	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1B6P8X9	0.0	A0A1B6P8X9_SORBI; Uncharacterized protein
STRING	Sb09g021780.1	1e-176	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-61	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Sobic.009G154300.1.p
Entrez Gene	8058529

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]