PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G151600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 348aa    MW: 35215.1 Da    PI: 5.1036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G151600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19135184255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sobic.009G151600.2.p 135 RFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 184
                           69*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32135193IPR001471AP2/ERF domain
PROSITE profilePS5103225.264135192IPR001471AP2/ERF domain
CDDcd000181.50E-18135194No hitNo description
SMARTSM003803.9E-36135198IPR001471AP2/ERF domain
PfamPF008472.4E-13135184IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22135193IPR016177DNA-binding domain
PRINTSPR003673.6E-11136147IPR001471AP2/ERF domain
PRINTSPR003673.6E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MADGRRWQAA AAGWPAAEPE EHDDDGATAA GVLSGEYQAL ETSTLVSALT HVVAGGDGYP  60
PWAAGAAREN NRAAMADPGQ AYSYGYGYAA APTPAHFFEA AAGGGEQGGA AAMEDGHHYS  120
PTAAAAGGGG GGERRFRGVR QRPWGKWAAE IRDPHKAARV WLGTFETAEA AARAYDEAAL  180
RFRGSRAKLN FPEDARLTTP STTAVATAAA PAAAGSSTTT TMAAAASTGG YYYPATASAA  240
AVSAADYLQY QMLLQGAGSS SHGGYPLYYD YGGGGGAMSS SSGSYSFPAS TVTVASVPSS  300
ASSAPSYGEA AGQWTAWPPE SAWSYPATTG SSWSGSSQYP PSTRPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22136192663ATERF1
3gcc_A1e-22136192663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G151600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302939.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A1Z5R3R50.0A0A1Z5R3R5_SORBI; Uncharacterized protein
STRINGGRMZM2G100727_P012e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-25ethylene response factor 110