PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G143700.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 445aa    MW: 49029.6 Da    PI: 4.1881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G143700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-5161331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++g
  Sobic.009G143700.2.p   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSG 93 
                           79*************************988.89**************95335666777******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++++  ++++vg+kktL+f++g+apkg +tdWvm ey++
  Sobic.009G143700.2.p  94 KDRNIML-NSRTVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                           *******.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-613156IPR003441NAC domain
PROSITE profilePS51005586156IPR003441NAC domain
PfamPF023651.9E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRNIML NSRTVGMKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDEDLVS SGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNPE  180
AESSMFPLMA SSEVVNPIEG PRAQPAAPAG ALQEPPLHNS SATCAGEESS FDYATANTCA  240
DDITFGYTVA SSAIQDIPAQ MSGDGVVSVN NISNEANDMY SPHDCDGFLL EELSRFLNDS  300
PGECSGLPPM SEAEAHAFEV SSFGLYNELS GLVGLGGVDN NSNVETTDYQ LPPDRELSAD  360
DYMELTDLLA PDPSFPTEFP AEDSQYMQYP LAHFNGHYDV PTMSGPLEPT MPSIFDAFPP  420
SNNGVLATDV VANYMDPTMQ FPFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.140870.0embryo| leaf| ovary| panicle| pollen| root| shoot
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G143700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279770.0KJ727977.1 Zea mays clone pUT6091 NAC transcription factor (NAC38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302870.10.0NAC domain-containing protein 82-like
TrEMBLA0A1B6P8R40.0A0A1B6P8R4_SORBI; Uncharacterized protein
STRINGSb09g020880.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-84NAC domain containing protein 103