PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G142200.1.p | ||||||||
Common Name | Sb09g020750, SORBIDRAFT_09g020750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 36083.9 Da PI: 8.6265 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.7 | 2.4e-49 | 20 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhPtdeelv++yL+++++g ++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gy Sobic.009G142200.1.p 20 LPPGFRFHPTDEELVMHYLCRRCAGLPISV-PIIAEIDLYKFDPWQLPIlslvcagMALYGEKEWYFFSPRDRKYPNGSRPNRAAGAGY 107 79****************************.88***************547877653334899************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg dk+v + + +kk Lvfy g+apkg kt+W+mheyrl Sobic.009G142200.1.p 108 WKATGADKPVGT--PKPLAIKKALVFYAGKAPKGDKTNWIMHEYRL 151 **********99..7789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-58 | 15 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.126 | 20 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 21 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MSGGGGGGRA PAAQSQELQL PPGFRFHPTD EELVMHYLCR RCAGLPISVP IIAEIDLYKF 60 DPWQLPILSL VCAGMALYGE KEWYFFSPRD RKYPNGSRPN RAAGAGYWKA TGADKPVGTP 120 KPLAIKKALV FYAGKAPKGD KTNWIMHEYR LADVDRTARN KNNSLRLDDW VLCRIYNKKG 180 VPERPAGAGG AEASSQQGAQ GSMGSPPEQK PSVPPHPTAG AGLYAPPPFS DLAAYCEVRP 240 SDSMPRAHGA DSSCSGQGHA LAATSSSCGG GERPEVQSQP KIAEWERTFA GAGAGPGINP 300 AGSMLGLGGH HQLGPAAVGV GQLPAGDPLL QDILTYWGKP Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-75 | 7 | 184 | 2 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.14555 | 0.0 | callus| embryo| leaf| root| shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G142200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017001 | 0.0 | KM017001.1 Miscanthus lutarioriparius NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439823.1 | 0.0 | NAC domain-containing protein 48 | ||||
Swissprot | Q7F2L3 | 1e-139 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | A0A1B6P8Z9 | 0.0 | A0A1B6P8Z9_SORBI; Uncharacterized protein | ||||
STRING | Sb09g020750.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-113 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G142200.1.p |
Entrez Gene | 8076977 |