PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G140500.1.p | ||||||||
Common Name | Sb09g020590, SORBIDRAFT_09g020590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 420aa MW: 44744.3 Da PI: 7.1273 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.8 | 4.3e-49 | 46 | 171 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ Sobic.009G140500.1.p 46 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADR 133 79***************************.89***************7767789*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Sobic.009G140500.1.p 134 MIRGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 171 ************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-56 | 44 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.723 | 45 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 47 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSRDLEDGHG AVGSVIAAAG GEAAEVAVGG DGGGEAGDAH DNDVVMPGFR FHPTEEELIE 60 FYLRRKVEGK RFNVELIAFL DLYRFDPWEL PAMAVMGGKE WFFYVPRDRK YRNGDRPNRV 120 TASGYWKATG ADRMIRGENN RPIGLKKTLV FYSGKAPKGV RSSWIMNEYR LPPPATDADP 180 LIPKSEISLC RVYKRSGIDD GHGQSSSSTQ QASSARRTSS RTGVPTTTVR QRSSPSSTPL 240 SPTQQISSFH LLQGESSSAS PPAPIMDHQV VTVHSAPPQL LPHHPMPCTY APVTTMSTVE 300 AAPQSAQAGA ATALASTYSV FNMAAGAAAM AGSSRSVDEL STLVGPTPAQ AYASLSAATG 360 GHLLPLLTTP PLPMLQMTPH GALPIVAPPS SSSVADKLSW DWNPIPDTTD RDYNPSGFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 47 | 196 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 47 | 196 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G140500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060478 | 0.0 | BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441111.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | C5YY51 | 0.0 | C5YY51_SORBI; Uncharacterized protein | ||||
STRING | Sb09g020590.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-92 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G140500.1.p |
Entrez Gene | 8058462 |