PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G138500.1.p | ||||||||
Common Name | Sb09g020440, SORBIDRAFT_09g020440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 309aa MW: 30611.1 Da PI: 7.147 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.4 | 2.2e-42 | 58 | 155 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+ Sobic.009G138500.1.p 58 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRL 146 7**************************************************************************************** PP DUF260 90 lkaelallk 98 +++ela++ Sobic.009G138500.1.p 147 VQQELARAT 155 *****9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.644 | 57 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-42 | 58 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAASSASSVP VVSTGSVITV AASPPPPPPT GGGGGGGGSI SAGSTGVVVG GGAGTGSPCA 60 ACKFLRRKCQ PDCVFAPYFP PDNPQKFVHV HRVFGASNVT KILNELHPYQ REDAVNSLAY 120 EADMRLRDPV YGCVGVISIL QHRLRLVQQE LARATYELSK YQAAAAAAEA ASVGVGSHGD 180 AAAGMAAVDF IGNAVANDCT QNFINVGHST AAAASISGAG GGFMQQQDSF GASVQMLARS 240 YEGGAAARVG MNGGGGSGYG GFAYSSAMGV VGHGGIVSAG LGGQQINGGQ QFLKPSTTAG 300 DDQPTATQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-53 | 54 | 161 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-53 | 54 | 161 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.5472 | 1e-130 | pollen |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G138500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY795560 | 1e-137 | AY795560.1 Triticum aestivum AS2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441102.1 | 0.0 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 5e-96 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A1Z5R3K0 | 0.0 | A0A1Z5R3K0_SORBI; Uncharacterized protein | ||||
STRING | Sb09g020440.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 3e-54 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G138500.1.p |
Entrez Gene | 8076962 |