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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.009G117700.2.p |
| Common Name | Sb09g018540, SORBIDRAFT_09g018540 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRAS |
| Protein Properties |
Length: 456aa MW: 49655 Da PI: 7.1262 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G117700.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 261.7 | 2.5e-80 | 35 | 448 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevs 88
e++ +c +a+++g+ +a++ L +s+l+s +gdp+qR+a+ f+eAL +r ++ + ++ly l + +++ + + + + f ++
Sobic.009G117700.2.p 35 EVMQHCINALATGNVLAANTGLVLMSTLSSAAGDPLQRVAFSFAEALGRRALQqMLPGLYGGLLRLDFPPQPpaVGYTCTTRLSFDALC 123
67889*******************************************99888799****999777776666434444444455***** PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
P+l+++ +aN+ I+ a+egee+vH++D++ + QW+ Ll+ +a Rp+g+p slR+T+v++ +++ l++ + L+ A++l++pf
Sobic.009G117700.2.p 124 PLLRVAASAANHEIVTAMEGEEHVHVVDLGGASPNQWIELLHLFAVRPGGKPsSLRLTVVSE----EERLLSAASWLLHWEAARLHIPF 208
************************************************887779********....99********************* PP
GRAS 177 efnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrll..................................desvsleserdev 227
fn++ + +rl ++ ++ v p gEala+ + lqlhrl +++ ++ d++
Sobic.009G117700.2.p 209 VFNPVrsHIDRLCPHDVASFGVVPggGEALAITSTLQLHRLIadvtssndlppaadsadhqhrgkkrkgkqpppppKHEITM---ADAL 294
****8666667777799999*************************************************9988755555555...55** PP
GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
L+++ +lsPkv+v++eqea+hn++s+ +r+ +a++yy+alf+ l + ++pr+s +r+ +Er ll++ei+++va g++rrerhe ++ W
Sobic.009G117700.2.p 295 LRVLCDLSPKVMVLTEQEANHNGGSLGDRVRNAFDYYAALFNDLeAGGAPRASADRAALERTLLRQEIMDIVARDGTSRRERHEGVMAW 383
********************************************77889**************************************** PP
GRAS 316 rerleeaGFkpvplsek...aakqaklllrkvksdg...yrveeesgslvlgWkdrpLvsvSaWr 374
+r+++aGF+p++l+ + a ++ ll + +++g y v +++ +++++ + p++sv+aWr
Sobic.009G117700.2.p 384 AQRMGMAGFQPMHLQVRrfdAFADPGLLALQLSMHGtlrYWVAQDNTCFIIYANMTPMFSVTAWR 448
*************98651114445445544444566666*************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MMQQASMQWG AVAAPTVILP AFQQLDSNRI QLIKEVMQHC INALATGNVL AANTGLVLMS 60
TLSSAAGDPL QRVAFSFAEA LGRRALQQML PGLYGGLLRL DFPPQPPAVG YTCTTRLSFD 120
ALCPLLRVAA SAANHEIVTA MEGEEHVHVV DLGGASPNQW IELLHLFAVR PGGKPSSLRL 180
TVVSEEERLL SAASWLLHWE AARLHIPFVF NPVRSHIDRL CPHDVASFGV VPGGGEALAI 240
TSTLQLHRLI ADVTSSNDLP PAADSADHQH RGKKRKGKQP PPPPKHEITM ADALLRVLCD 300
LSPKVMVLTE QEANHNGGSL GDRVRNAFDY YAALFNDLEA GGAPRASADR AALERTLLRQ 360
EIMDIVARDG TSRRERHEGV MAWAQRMGMA GFQPMHLQVR RFDAFADPGL LALQLSMHGT 420
LRYWVAQDNT CFIIYANMTP MFSVTAWRPA TTTGE*
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