PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G101400.1.p | ||||||||
Common Name | DREB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 36174.3 Da PI: 4.828 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 83 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++g Sobic.009G101400.1.p 83 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYG 133 79*****999.**********8...2.489**********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-13 | 83 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.29E-30 | 83 | 141 | No hit | No description |
SMART | SM00380 | 2.9E-33 | 84 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 84 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 84 | 142 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-32 | 85 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MTLDQNQATP MQPPALQPGS RKKRPRRSRD GPTSVAAVIQ QWAEHNKQLE YAPEGSKRPR 60 KAPAKGSKKG CMRGKGGPDN TQCGYRGVRQ RTWGKWVAEI REPNRVNRLW LGTFPTAEDA 120 ARAYDEAARA MYGDLARTNF PRPHAATYAQ AALVSTSSQA APMAVGALWP GTSCESTTTS 180 NHSDIASTSH KPEASDSSSS LKAEWPEALE AGSSCIQAGT PSVADKVFGT LEPITKLPDG 240 GVTNLPDGGV INLPDGGDDC FDIGEMLSMM EADPHNEGGA DVGMGQPWCL DGLDSSVLES 300 MLQSEPEPFL MSEEQEMFLA GFESPSSFFE DLERLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 85 | 141 | 6 | 63 | ATERF1 |
3gcc_A | 3e-15 | 85 | 141 | 6 | 63 | ATERF1 |
5wx9_A | 4e-15 | 85 | 144 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.11649 | 0.0 | callus| leaf| panicle| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G101400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF915839 | 0.0 | JF915839.1 Sorghum bicolor dehydration responsive element binding protein 2 isoform a (DREB2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302433.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X3 | ||||
Swissprot | Q5W6R4 | 6e-79 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A1B6P850 | 0.0 | A0A1B6P850_SORBI; Uncharacterized protein | ||||
STRING | Sb09g016150.2 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G101400.1.p |
Publications ? help Back to Top | |||
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