PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.009G092100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 379aa MW: 40832.5 Da PI: 6.8836 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.8 | 3.9e-27 | 191 | 250 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs+fprsYYrCt++ gC++kkkv+r ++dp + e+tY g+H++ Sobic.009G092100.1.p 191 DDGYTWRKYGQKDILGSRFPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 250 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.8E-27 | 183 | 250 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 188 | 250 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 190 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 191 | 250 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.264 | 191 | 248 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MDDVLRQIDE GFRLARDLME ELPAAQNERT YLADRCHGIV QAYVAAIRML HPHGGTEDTA 60 SSPPPLRPPH PPSPHFGGDG SGSGQHDHEI PQLDLLRPFL GGAPSPSAPS SFPHNLGRLL 120 AESSFINTTP VVDAFGAGTS SGGPVRRQAS SSRSSPPVQL RQQHRRRREN GERMTIMVPV 180 QRTGNTDLPP DDGYTWRKYG QKDILGSRFP RSYYRCTHKN YYGCEAKKKV QRLDDDPFTY 240 EVTYCGNHTC LTSTTPLLTI PAGPATVAST AANMLNNSPT DSATALAAGH QDLFMPAAEH 300 PAQALSTAIQ LGISWMPSTL VGSSAPEGSS SQVNVPASGR DTAEYPVMDL ADAMFNSGSR 360 GGSSMDAIFL ARHDRRDT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-21 | 191 | 250 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.009G092100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439531.2 | 0.0 | probable WRKY transcription factor 17 | ||||
TrEMBL | A0A1Z5R1R1 | 0.0 | A0A1Z5R1R1_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G127064_P01 | 1e-156 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-45 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.009G092100.1.p |