PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G083800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 957aa MW: 105423 Da PI: 5.2987 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.6 | 3.8e-20 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +av+ + g++Wk+Ia+ ++ gRt+ qc +rwqk+l Sobic.009G083800.1.p 50 KGNWTPEEDDILREAVETYKGKNWKKIAESFP-GRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.6 | 7.9e-20 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Sobic.009G083800.1.p 102 KGPWSKEEDEIIIQMVNKHGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.2 | 5.1e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT++E+ +l++a++ +G++ W+ + ++ gRt++ +k++w+ Sobic.009G083800.1.p 154 KDAWTQDEEIRLIHAHQTYGNK-WAELTKFLP-GRTDNAIKNHWH 196 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.462 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-16 | 47 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-18 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-18 | 50 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 51 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.96E-16 | 52 | 96 | No hit | No description |
PROSITE profile | PS51294 | 32.57 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-19 | 101 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-18 | 102 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-16 | 104 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 110 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 153 | 201 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.884 | 153 | 203 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.4E-13 | 154 | 196 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-21 | 156 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.77E-10 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 957 aa Download sequence Send to blast |
MMTGEKQMTS KGTESSSSSV PPDGVVSREP QKGGRLPNGR TTGPARRSSK GNWTPEEDDI 60 LREAVETYKG KNWKKIAESF PGRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIIQMVNKH 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKDAWTQD EEIRLIHAHQ TYGNKWAELT 180 KFLPGRTDNA IKNHWHSSVK KKVDSYRSSG LLAQFQGLTP VEYTPGGLNV DSSSAMTNQI 240 SEDSGFNVFR EAEDSMELSQ SSFAKGSCSQ EEQTDVTLGS HLHVHESLCQ DGFNNAENGA 300 SALPDMHHHL STSDMDQDKH LQEGMDLDKH LQLEFSQGID LHLDTDEVPN NFVIRDSQAS 360 NELAVQFQDR QTMNSSENDG VSLIPYAVTP CVPILPSVSG CEHNINVMSE VGIKNDNCFQ 420 SEKWQDISIQ SGAYSSEAAS NFSAPLYPLQ TAEPVTMMGG PVYYQSSVTS LPPDFISSDG 480 ASNASGVKFE TNHNPVSRQG LEIKTCHNPS GDPDQNSYMC SEDDRNRTSE PMDSIPESEK 540 EQQVDVEQSC LEPAAYSFKE PLSSHGDTIL NEKEDAGALC YEPPCFPSFE VPFVSCELVN 600 SSDLPEYSPL GIRELMRTTL NFPTPVRLWG SPPRDGSPDA VLKNAAKRFV CTPSIMKKRP 660 RDLSSPGPDI RNEKKSNTEK DCRSSGMSST RVGKSCMDSP DDSADLVSPK ETTAFQKNVK 720 LSHENKENLN GITDQGENEG NAKHSTGILT KSSVDNHNTP KHGPNFQSQG LNTSAQVSNS 780 KDIIFSRSKP SELLVDKSAA CVDADYEYVN ILADTPGIKR GLESPSAWKS PLFTPFPDAY 840 FMSPASRAFD ALGLVKQINE QSAAAVEEAH EVLASGGPWK RHNKENSDKE NIENTTLKHE 900 HVTSKPPSIL MAEARVLDFN ECSTPVRKKE DKKSEIALGG SSSSPVTSSY LRMNLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-65 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-65 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7520 | 0.0 | leaf| ovary| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G083800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT017128 | 0.0 | BT017128.1 Zea mays clone EL01N0365C01.c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439472.2 | 0.0 | transcription factor MYB3R-1 | ||||
TrEMBL | A0A1B6P7E4 | 0.0 | A0A1B6P7E4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g007380.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-101 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G083800.1.p |