PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G075600.1.p
Common NameSb09g006370, SORBIDRAFT_09g006370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 337aa    MW: 34865.7 Da    PI: 4.9361
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G075600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69e-07446541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+ +e  e++  C  ++  lC+ C  e H        H++ p
  Sobic.009G075600.1.p  4 LCSACEAAEASVLCCADDAALCARCDREVHAAnrlagkHQRLP 46
                          7******99*********************6577888998877 PP
2zf-B_box27.28.3e-0960100337
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                           ++kC+ ++e  + +fC +++ llC++C ++ H        H
  Sobic.009G075600.1.p  60 PPKCDICQECDAYFFCLEDRALLCRSCDVAVHTAnafvsaH 100
                           689****9988*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879147IPR000315B-box-type zinc finger
SMARTSM003364.0E-10147IPR000315B-box-type zinc finger
CDDcd000214.38E-7347No hitNo description
SMARTSM003362.4E-1358105IPR000315B-box-type zinc finger
PfamPF006431.9E-76092IPR000315B-box-type zinc finger
CDDcd000211.43E-861105No hitNo description
PROSITE profilePS501199.08663105IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKVLCSACEA AEASVLCCAD DAALCARCDR EVHAANRLAG KHQRLPLLAP GGQSAAAVSP  60
PKCDICQECD AYFFCLEDRA LLCRSCDVAV HTANAFVSAH RRFLLTGVQV GQELESDDLS  120
REQQPEASPP PPPSKSEPAP PPPPPLYNES DFGWAAGAGA TGSLADWSAV EEEFGSPAPC  180
LAEAAPRATP KRSPRAPPAF GAAGQGRVAG GVMDWPLGEF FRGVSDFNGG GFSFGESGTS  240
KADSSGKLGG SAGGSPYYRS SSEDRDAANE LFGQVPEIQW SVPALPSPPT ASGLHWQHGG  300
HDSNAFVPDI CSPDGGGAGV RCFPTANGAA KRQRNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335KRQRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G075600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439437.10.0B-box zinc finger protein 22
TrEMBLC5YUM10.0C5YUM1_SORBI; Uncharacterized protein
STRINGSb09g006370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-38light-regulated zinc finger protein 1