PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G075500.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 32291.5 Da    PI: 9.9218
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G075500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-3163113151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                           krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Sobic.009G075500.3.p  63 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 113
                           79***********************************************95 PP
2K-box90.33.5e-301342277100
                 K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                               +e + ++++qe+a+L+++i nLq+++R l+G d++++s k+L++Le++L+k+l kiR++Kne+l++++e++q++e elq++n +L
  Sobic.009G075500.3.p 134 AGtIAEVTIQHYKQESARLRQQITNLQNSNRALIG-DITTMSPKDLKHLETRLDKALGKIRARKNEVLCSELEYMQRREMELQNDNLYL 221
                           335788899**************************.6**************************************************** PP

                 K-box  95 rkklee 100
                           r++++e
  Sobic.009G075500.3.p 222 RSRVDE 227
                           *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.21255115IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-3855114IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-3256127IPR002100Transcription factor, MADS-box
CDDcd002659.67E-4456129No hitNo description
PRINTSPR004041.6E-315777IPR002100Transcription factor, MADS-box
PfamPF003191.2E-2664111IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-317792IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-3192113IPR002100Transcription factor, MADS-box
PfamPF014862.2E-22142225IPR002487Transcription factor, K-box
PROSITE profilePS5129712.857142231IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MHIREEQAMP STVTGIMSTL TSAGLKLKEP ATMSPGGSAS VAAGFGSAAE RNNGRGKGKT  60
EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI VFSSRGRLYE YSNNSVKATI  120
ERYKKANSDN SSAAGTIAEV TIQHYKQESA RLRQQITNLQ NSNRALIGDI TTMSPKDLKH  180
LETRLDKALG KIRARKNEVL CSELEYMQRR EMELQNDNLY LRSRVDENER AQQTVNMMGA  240
PSTSDYQQQG FIPYDPIRSF LQFNIMQQPQ FYSQQEDRKD FNLGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-1956143289MEF2 CHIMERA
6bz1_B4e-1956143289MEF2 CHIMERA
6bz1_C4e-1956143289MEF2 CHIMERA
6bz1_D4e-1956143289MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.111300.0ovary
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and ovules during their development. {ECO:0000269|PubMed:16326928}.
UniprotTISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G075500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMZEZAG1A0.0L18924.1 Corn ZAG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302806.10.0MADS-box transcription factor 3-like isoform X3
SwissprotQ2V0P11e-126MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A1B6P7D00.0A0A1B6P7D0_SORBI; Uncharacterized protein
STRINGSb09g006360.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  7. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  8. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  9. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]