PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G073800.2.p | ||||||||
Common Name | Sb09g006220, SORBIDRAFT_09g006220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 34527.4 Da PI: 7.1786 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.6e-14 | 226 | 271 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er+RR++iN++f+ Lr lP++ K +K +iL +A +YI+sLq Sobic.009G073800.2.p 226 HLLSERKRREKINDSFDALRNALPPS-----SKRDKTSILMRARDYINSLQ 271 6678********************98.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.98E-18 | 219 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.97E-14 | 223 | 275 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 225 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-11 | 226 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.6E-14 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MDGCSWPPSP SIGGARAVFS GDMPWHKASN SSCDDSDHLH SQREEQDVVV SSQQLQQQLQ 60 QIYALLDMEQ EHELHLHHAV PPQSPSQHQW SSSPSSSSLV LSASSATTAF CQQPAQASSL 120 DTPFSPFPYG YLETIPNLNR EEIMSQARHK DGSGTSAFRQ YVRHLHPKKK LKQGACGQRA 180 IKTAMSVLVK MHSARLSQRQ RQSSRTEMAA PAVPSSDESN NIQLQHLLSE RKRREKINDS 240 FDALRNALPP SSKRDKTSIL MRARDYINSL QSRVSELEEK GMALESQLCI DYGYEQDVNG 300 YPEKIEQQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 172 | PKKKLKQ |
2 | 229 | 234 | ERKRRE |
3 | 230 | 235 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G073800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302888.1 | 0.0 | transcription factor BHLH148 isoform X1 | ||||
TrEMBL | C5YUF5 | 0.0 | C5YUF5_SORBI; Uncharacterized protein | ||||
STRING | Sb09g006220.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 | Representative plant | OGRP10417 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G073800.2.p |
Entrez Gene | 8055721 |