PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G072200.1.p
Common NameSb09g006060, SORBIDRAFT_09g006060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 303aa    MW: 32071.2 Da    PI: 10.1043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G072200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-14122166347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++ +  +lG g+W+ I+r++ ++Rt+ q+ s+ qky
  Sobic.009G072200.1.p 122 PWTEEEHRMFLAGLDKLGRGDWRGISRHFVTTRTPTQVASHAQKY 166
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.147115171IPR017930Myb domain
SuperFamilySSF466891.72E-18116172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18118170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-11119165IPR009057Homeodomain-like
SMARTSM007173.4E-11119169IPR001005SANT/Myb domain
CDDcd001671.02E-9122167No hitNo description
PfamPF002493.0E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG HRCQVTSISI NSTSTTTSCG SLRLFGVQLQ VGSSPLKKCL  60
SMECLSPIAC YGAAAASSSL SPSVSSSSSS LASIEESSQR ITGGYVSDGL VVRVQDRKKG  120
VPWTEEEHRM FLAGLDKLGR GDWRGISRHF VTTRTPTQVA SHAQKYFLRQ NSLTQKKRRS  180
SLFDADEGAN KAALRRTASV SELQFPSLSP VAVDARTTKG AVPLPPCLNL MMSSASQCAG  240
SGSGSSDASQ TQNPSSLYLM AKPHQAQLQM PDLELKMSTS RLSEQPGGAS RGTPLFGTIR  300
VT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G072200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794620.0HF679462.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB56 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440757.10.0transcription factor MYBS3
TrEMBLC5YUD60.0C5YUD6_SORBI; Uncharacterized protein
STRINGSb09g006060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-48MYB_related family protein