PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G071600.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 352aa    MW: 39512.6 Da    PI: 7.8538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G071600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.6e-3351512128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd.....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                           p+G++F+P+d+el+ e+L+  v++     +        +i+++d     i++++P++Lp  v+ +  + +fF++ +k+y++g+rk+r+ 
  Sobic.009G071600.4.p   5 PAGVKFDPSDQELI-EHLESMVKEGGsraH---PligdFIHTIDqgndgICYTHPENLP-GVTRNGVSKHFFHRPSKAYTSGTRKRRKi 88 
                           89************.99*****99995552...2333345555445566**********.444556688******************87 PP

                   NAM  78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      + ++ W++tgk+++vl+ +g+++g kktLv+y   g+++k+ekt+Wvmh+y+l
  Sobic.009G071600.4.p  89 kserglrscddVGEACWHKTGKTRPVLV-GGQQKGWKKTLVLYnsYGKQRKPEKTNWVMHQYHL 151
                           899999988888899*************.9*************6658999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-352168IPR003441NAC domain
PROSITE profilePS5100531.1194168IPR003441NAC domain
PfamPF023651.2E-155151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVGFPAGVKF DPSDQELIEH LESMVKEGGS RAHPLIGDFI HTIDQGNDGI CYTHPENLPG  60
VTRNGVSKHF FHRPSKAYTS GTRKRRKIKS ERGLRSCDDV GEACWHKTGK TRPVLVGGQQ  120
KGWKKTLVLY NSYGKQRKPE KTNWVMHQYH LGREEKDGEL VVSKVFYQQK QLRPTATMMG  180
QNDERVEVTS EAMKDMLPGC GAAAAEAGDA MIQLQQHLQQ RQADGQSRFT SARMSREVGV  240
GNPLVGDQGL LHETHHIPSQ HNEVRSMLVK PVHTMPSVES TPLEHRIDQI IACSAISLSP  300
PEQRSENQED RQQQKKVDCR RPCSSEEAMI ACQTSSTEED VQEELQLFPR R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G071600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303920.10.0NAC domain-containing protein 10
TrEMBLA0A1B6P7060.0A0A1B6P706_SORBI; Uncharacterized protein
TrEMBLA0A1Z5R1C50.0A0A1Z5R1C5_SORBI; Uncharacterized protein
STRINGSb09g006018.11e-138(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.14e-80NAC domain containing protein 75