PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G068900.1.p
Common NameSb09g005700, SORBIDRAFT_09g005700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 207aa    MW: 22091.3 Da    PI: 7.5454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G068900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30109167159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh 
  Sobic.009G068900.1.p 109 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 167
                           59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-3397169IPR003657WRKY domain
SuperFamilySSF1182906.54E-28101169IPR003657WRKY domain
PROSITE profilePS5081131.996104169IPR003657WRKY domain
SMARTSM007741.2E-35109168IPR003657WRKY domain
PfamPF031061.7E-24110166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQMAASLGLN PEALFASYSS AYSSSSPFVS DYAASFPAAV DSATAFSAEL DDLHHFDYSP  60
APIFTAVGAG AGGDRNEKMM MWCEGGGDEK RLRSSGRIGF RTRSEVEILD DGFKWRKYGK  120
KAVKNSPNPR NYYRCSSEGC GVKKRVERDR DDPRYVITTY DGVHNHASPG AAAIIQYGGG  180
GGNSGFYSPP HSGSPSAASY SGSFVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2894169277Probable WRKY transcription factor 4
2lex_A2e-2894169277Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.490.0leaf| ovary
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G068900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0644570.0BT064457.1 Zea mays full-length cDNA clone ZM_BFc0171E09 mRNA, complete cds.
GenBankHQ8587720.0HQ858772.1 Zea mays clone UT1758 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.11e-150probable WRKY transcription factor 50
TrEMBLC5YU851e-149C5YU85_SORBI; Uncharacterized protein
STRINGSb09g005700.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-41WRKY DNA-binding protein 50