PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.009G058600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 308aa MW: 32501.1 Da PI: 9.6861 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.7e-40 | 118 | 217 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r d+++slvyeA+ r+rdPvyG++g il+lqqq++ Sobic.009G058600.2.p 118 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADTANSLVYEANLRLRDPVYGCMGAILTLQQQVQA 206 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+aela++++e Sobic.009G058600.2.p 207 LEAELATVRAE 217 *******9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.237 | 117 | 218 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-40 | 118 | 215 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MVQEHPYISC STISCQHRRI LLILLCQAHT LKRHKHRKPR SHLFQSTSIP FLSPQAIFFM 60 STASASEWPD HDELGKKIKR ESAAERMTAA ARRSCSSPVG AGAVAGAGPG SALNTITPCA 120 ACKLLRRRCA QECPFSPYFS PLEPHKFAAV HKVFGASNVS KMLLEVHESQ RADTANSLVY 180 EANLRLRDPV YGCMGAILTL QQQVQALEAE LATVRAEIVR HRCRPAAVLP SSHASQLLAA 240 SAAGRGLHAG SRPSVGARAA TLAAAAAAAA VGPVASSSSS SAVYAAAAAS SSTDYSSITN 300 ENVPYFG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 118 | 232 | 11 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 118 | 232 | 11 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.009G058600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-144 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440676.2 | 0.0 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 4e-68 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1Z5R139 | 0.0 | A0A1Z5R139_SORBI; Uncharacterized protein | ||||
STRING | Sb09g004940.1 | 1e-176 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 9e-58 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.009G058600.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|