PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G050600.2.p | ||||||||
Common Name | Sb09g004315, SORBIDRAFT_09g004315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 123aa MW: 13884.5 Da PI: 10.5452 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 27.2 | 5.3e-09 | 11 | 28 | 18 | 35 |
GATA 18 gnktLCnaCGlyyrkkgl 35 +k+LCnaCG++yrkk++ Sobic.009G050600.2.p 11 HHKSLCNACGIRYRKKRR 28 6899***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00320 | 1.8E-6 | 11 | 28 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-5 | 12 | 29 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MMMDSAAEHQ HHKSLCNACG IRYRKKRRQE LGLDTTKKPQ QNQAQPQTPQ QQQQQQQQQQ 60 QQQHQDQDQS HSQATSAVVK ENNTKSSNLQ VVKKRRVLMG VEEAAILLMA LSSSSRSTLL 120 HG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G050600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728012 | 5e-52 | KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440630.2 | 5e-75 | GATA transcription factor 23 | ||||
TrEMBL | A0A1Z5R214 | 2e-81 | A0A1Z5R214_SORBI; Uncharacterized protein | ||||
STRING | Sb09g004315.1 | 2e-74 | (Sorghum bicolor) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G050600.2.p |
Entrez Gene | 8076012 |