PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G040000.2.p | ||||||||
Common Name | Sb09g003390, SORBIDRAFT_09g003390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27998.4 Da PI: 8.7472 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 6e-12 | 90 | 133 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WTt E+ ++++ + +G g Wk I++++ +Rt+ q+ s+ qky Sobic.009G040000.2.p 90 WTTHEHRNFLHGLEVFGRGKWKNISKYFVPTRTPVQISSHAQKY 133 *****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.759 | 82 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-8 | 86 | 136 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.57E-15 | 86 | 138 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-13 | 89 | 137 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.7E-10 | 90 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 90 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.42E-9 | 90 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDPNFNSVWS TSEINMAKSL ITSHITNNTY TSSAHVNNNF GMPMEAPLVD NMGMLKCCLM 60 DETRAMRCRE GQQHMPNVVP KQRRHAVRFW TTHEHRNFLH GLEVFGRGKW KNISKYFVPT 120 RTPVQISSHA QKYFHRQECT TKKQHFSIND VSLYDTQPWV QNNSSRWETL TFTSGAFNTN 180 YNNFDGKHVA FNSLACASQT SFNQVATWIT DQQTTISSFV APVMEVDGSQ MTSNGHQLGH 240 FLHN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G040000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440574.1 | 0.0 | myb-like protein J | ||||
TrEMBL | A0A1Z5R0X7 | 0.0 | A0A1Z5R0X7_SORBI; Uncharacterized protein | ||||
STRING | Sb09g003390.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 | Representative plant | OGRP2767 | 5 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 2e-18 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G040000.2.p |
Entrez Gene | 8069474 |