PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G039900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 174aa MW: 20085.5 Da PI: 7.694 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 9.6e-11 | 99 | 142 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WTt E+ ++++ + +G+g W++I++++ ++t+ q+ s+ qky Sobic.009G039900.1.p 99 WTTYEHRNFLHGLEAFGSGEWNSISKYFVPTKTPVQISSHAQKY 142 *****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.63 | 91 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-5 | 95 | 145 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.9E-13 | 97 | 147 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-8 | 99 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-12 | 99 | 146 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-9 | 99 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-6 | 99 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDPNFNEGWS SSEIDMVKSL ITSHITNKTY TNDTNKKHNE FVDDLQAMFP WKEKHQVINL 60 YVELVVEMTM AQSSNQHVVG SSALVNVVPK KRRHAVKFWT TYEHRNFLHG LEAFGSGEWN 120 SISKYFVPTK TPVQISSHAQ KYFHRQECTT RRQCFNTNNV SLCDTQPSMP EDQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G039900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303246.1 | 1e-104 | uncharacterized protein LOC110430251 | ||||
TrEMBL | A0A1B6P6R9 | 1e-128 | A0A1B6P6R9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G030403_P01 | 6e-81 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 | Representative plant | OGRP2767 | 5 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-17 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G039900.1.p |