PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 357aa    MW: 40449.4 Da    PI: 6.2693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-14136180347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E++ ++++ + +G g+Wk I+r++  +Rt++q+ s+ qky
  Sobic.009G039700.1.p 136 AWTQDEHKNFLRGLEVHGRGSWKNISRYFVPTRTPNQICSHAQKY 180
                           6*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.79125185IPR017930Myb domain
SuperFamilySSF466891.79E-14133184IPR009057Homeodomain-like
SMARTSM007172.0E-7133183IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.9E-12135183IPR006447Myb domain, plants
PfamPF002491.1E-11136180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-10136178IPR009057Homeodomain-like
CDDcd001677.48E-10136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDPNFNGVWS TFEIDMVRSF IASQNTNNTY TNDPNKRHND IVDELQAWFP GKERHQVTQL  60
YVDLVVETNR VQSNNHQVVG RNALVNENFG MPTEDKNMDM FHGFTLDDVE AMKMVEEPPH  120
RVNTIPKKKR QHPVIAWTQD EHKNFLRGLE VHGRGSWKNI SRYFVPTRTP NQICSHAQKY  180
FLRNECTTRK QRFSINDVGL YDIEPQVQKN PSSSEALAFG HSAYNTNYYD FEGQHTVLNT  240
LTHASQASKT RGQHIIGSSS IDSTMVQSNS LGWEALAFTS GANNTNYYEF DGQHDAMNNL  300
ACADQASNNQ VSTWTKGQQT TTSPIAPMMV QNTSSSWEGL SFDGSSYNTN YYDFGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302637.10.0myb-like protein H
TrEMBLA0A1B6P6D90.0A0A1B6P6D9_SORBI; Uncharacterized protein
STRINGSb09g003310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.15e-21MYB family protein