PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039600.1.p
Common NameSb09g003350, SORBIDRAFT_09g003350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 335aa    MW: 37998.3 Da    PI: 7.2205
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.7e-12102146347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT +E++ ++++ + +G g+Wk I+r++  +Rt+ q+ s+ qky
  Sobic.009G039600.1.p 102 AWTHDEHKNFLRGLEVYGRGSWKNISRYFVPTRTPIQICSHAQKY 146
                           6*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.54893151IPR017930Myb domain
SuperFamilySSF466892.03E-1498150IPR009057Homeodomain-like
SMARTSM007173.4E-699149IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.3E-13101150IPR006447Myb domain, plants
PfamPF002491.7E-9102146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-9102147IPR009057Homeodomain-like
CDDcd001672.15E-8102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDPNLNGVWS GSEIDMVRSF IASHNTNNTY TSDTNKKHND IVDELQARLL GKEKQHQDTN  60
MENMDMFHGY ILDDVVSMNM VEEPPRKLNS VPKKKRKHPV IAWTHDEHKN FLRGLEVYGR  120
GSWKNISRYF VPTRTPIQIC SHAQKYFQRK ECTTRKQRFS INDVGLYDTE PWVQKNSSSL  180
EALAFGHSAY NTNNYDIEGQ HAVLNKLTHA SEVSTTRGQH IIGSSSKDPM MVQSNSPGWV  240
GPTFPNGANN TNYFGLQHDA MNNLTCVDQV SNNQVATWTR GEQETTSLVP PMTVQNTSHR  300
WEVFPIDGSA CNKNYYVFDG QQVPMNNITG GQPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302637.11e-169myb-like protein H
TrEMBLA0A1Z5R1H90.0A0A1Z5R1H9_SORBI; Uncharacterized protein
STRINGSb09g003350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.12e-19MYB family protein