PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039000.1.p
Common NameSb09g003290, SORBIDRAFT_09g003290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 277aa    MW: 31715.5 Da    PI: 7.3799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-09133178247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WT +E+  ++ +   +G g+Wk I++ + +++t+ q+ s+ qk+
  Sobic.009G039000.1.p 133 RFWTLDEHRNFLFGLCAYGRGNWKNISKDFVTTKTPVQVSSHAQKF 178
                           56******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-8125182IPR009057Homeodomain-like
PROSITE profilePS5129413.094127183IPR017930Myb domain
SuperFamilySSF466895.3E-14129184IPR009057Homeodomain-like
SMARTSM007174.3E-5131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.8E-13131182IPR006447Myb domain, plants
PfamPF002491.2E-5135177IPR001005SANT/Myb domain
CDDcd001676.08E-5135179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDPKFNGDWT ANEIETVRSI IASHDAKIRW SNNRDAMHYG IVEELHARFP RKDKRQVIDL  60
YVDLVVEMVN AIPMSSNQLP MTVSNGHVVD NFEVTVENLG VHNMDEMKAQ RMVEEQHHRK  120
VVVPQQDKQR ARRFWTLDEH RNFLFGLCAY GRGNWKNISK DFVTTKTPVQ VSSHAQKFFR  180
RQESTTKKQR YSINDVSLYD TKPCSNAYNP YCYGSGGQLT SMDNLTQVYS PFQGPASQAG  240
SSHTITWAAG QQTPLHSSAT PVMEEDGTQM EWTNYY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121761e-123ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848681e-102KF184868.1 Saccharum hybrid cultivar R570 clone BAC 022B01 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440565.10.0transcription factor SRM1
TrEMBLC5YZN90.0C5YZN9_SORBI; Uncharacterized protein
STRINGSb09g003290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-24MYB family protein