PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G036333.2.p
Common NameSORBI_K024500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 405aa    MW: 41864.7 Da    PI: 4.6268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G036333.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13233278555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Sobic.009G036333.2.p 233 HIVAERKRREKINKRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 278
                           8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16233287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-15233282No hitNo description
Gene3DG3DSA:4.10.280.104.4E-17233286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11233278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEAEAASNME DSSLFMQWAM DTLLQEEEPA VDDVHWAMDT LLQEEEEEHA AVDGGDAVVF  60
PSLQALRDAS HAAEMVRELM AVAAAAETHD AAAANSSPSG GSGDGGGEVT DGGSSGATGT  120
DPAAPATTAA TDYYGGSWPP QSPTSSSFAR APPPAPPSSN SNTILPTVSW NFVTGSAQPG  180
SEGVLEEAAV PARSLPPPEL AQRRRSPPPP RRAAHHPVRS MGAPSSASCT PDHIVAERKR  240
REKINKRLIE LSTVIPGLKK MDKATILSDA AKYVKELQQR LKALEDAAAA DAGSIRRKAP  300
PAADENGGSG SPTSASSSSG APALPEIEAR LSERSVMVRI HSCGGKGVAA AALAVVEGLG  360
LTVVHANVMP FSACTISITI TAEASPFSSY YSFLPIFILF GYLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241ERKRRE
2237242RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G036333.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071902e-47AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588622e-47HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306359.10.0transcription factor MYC2
TrEMBLA0A109ND180.0A0A109ND18_SORBI; Uncharacterized protein
STRINGSb2250s002010.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-19bHLH family protein