PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G035700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 327aa    MW: 35293.8 Da    PI: 4.6576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.2e-131554544
                          SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                           k  r+ tf kR +++l KA+ LSvLC++ va++++++++
  Sobic.009G035700.1.p 15 QKAARNATFRKRCATLLEKAKKLSVLCQIPVAMVVYGPDN 54
                          67889*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-12162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.087363IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-6525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-16598IPR002100Transcription factor, MADS-box
CDDcd002668.00E-18779No hitNo description
PfamPF003191.2E-111554IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MPRNHGKVKI QWIVQKAARN ATFRKRCATL LEKAKKLSVL CQIPVAMVVY GPDNAEPAFW  60
PENLDEAKGI MRSYLELPEA SKETQRLNNE GFLRNALKKM RKRFETYKAT AGQLEVNLIL  120
NDVSLGRRSN LDDLAPELAA AVRSNVALLR SSVNERVNSL TSAAAAVVLP PLAPEEAVAA  180
MPVPSQEEPL MVAPLAMAPP MVANSPLFVL PSPPLDPDVL LVPPQEPLMA PSQEPLMVPP  240
FAMAPPADVP VLVPVPHTLQ AAVGDPLAPA AGVGVDDDDG FPRDGSYLLE VADAILDDDS  300
GRQATEEDVD RLLWEHGLES FIKPKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304121.10.0MADS-box transcription factor 56
TrEMBLA0A1B6P6J10.0A0A1B6P6J1_SORBI; Uncharacterized protein
STRINGSb09g003030.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2104367
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-16M-type_MADS family protein