PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G025900.1.p | ||||||||
Common Name | Sb09g002190, SORBIDRAFT_09g002190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 22816.1 Da PI: 6.692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.2 | 1.2e-42 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q+++ Sobic.009G025900.1.p 38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEEHRADAVSSMVYEAAARIRDPVYGCAGAICQLQKQVNE 126 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 lka+la++++e Sobic.009G025900.1.p 127 LKAQLARAHAE 137 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.002 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-42 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDCSSDTAVC AVAVAAATAQ SPPSSPQPAA AAAVVLSPCA ACKILRRRCV DRCVLAPYFP 60 PTEPHKFATA HRVFGASNII KLLQELPEEH RADAVSSMVY EAAARIRDPV YGCAGAICQL 120 QKQVNELKAQ LARAHAELAG ARAQHAHLLA LLCVEVAATA SPPSYCGAAD YSSSSHHQLA 180 VVANPMMAAD ALYVVDGAGA ALQMQVGSPV SWADEALWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 37 | 138 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 37 | 138 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.8638 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G025900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 1e-93 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440509.1 | 1e-156 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-61 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | C5YZ34 | 1e-155 | C5YZ34_SORBI; Uncharacterized protein | ||||
STRING | Sb09g002190.1 | 1e-156 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-48 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G025900.1.p |
Entrez Gene | 8071251 |