PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G024600.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | AP2 | ||||||||
Protein Properties | Length: 422aa MW: 46647.6 Da PI: 9.3131 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5e-17 | 115 | 164 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sobic.009G024600.7.p 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-9 | 115 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-16 | 115 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.04E-11 | 116 | 174 | No hit | No description |
SMART | SM00380 | 3.3E-32 | 116 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 116 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-17 | 116 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-6 | 207 | 251 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.26E-12 | 207 | 252 | No hit | No description |
SMART | SM00380 | 4.2E-13 | 208 | 256 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
SDSDAAGADD DDDATPSPPP HHHQHHHHQH HHQQQLVTRE LFPAGTGPPL PSPQHWAELG 60 FFRADPPRPH QQQPDIRILP HPHQHPHATP PVAPPPPVQP QPAKKSRRGP RSRSSQYRGV 120 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM 180 KQMKSLSKEE FVHVLRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC 240 NGREAVTNFE PSTYDGELLT EVSTEVAEVD LNLSISQPAS QSPKRDKSCL GLQLHHGSFE 300 GSESKKTKID TPSELSGHPH RFPLMTEHPP AWPAQSHPFF TNHESTSSRD LNRRPEGGAP 360 SWAWKVTAAP PHTLPLPLFS SSSSSAAASS GFSNTATTAA PSASLRFDAP PSSSSSHHHR 420 R* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.5257 | 0.0 | embryo| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G024600.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095736 | 0.0 | FP095736.1 Phyllostachys edulis cDNA clone: bphyem202e07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303266.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X6 | ||||
Swissprot | B8AXC3 | 1e-154 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A1Z5R0H7 | 0.0 | A0A1Z5R0H7_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.J23348.1.p | 1e-179 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 2e-89 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G024600.7.p |