PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G024600.10.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 386aa    MW: 42519 Da    PI: 9.7768
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G024600.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17115164155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sobic.009G024600.10.p 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                            78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-9115164IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-16115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-17116173IPR001471AP2/ERF domain
CDDcd000189.04E-11116174No hitNo description
SMARTSM003803.3E-32116178IPR001471AP2/ERF domain
PROSITE profilePS5103217.794116172IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-6207251IPR016177DNA-binding domain
CDDcd000181.66E-12207252No hitNo description
SMARTSM003804.2E-13208256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
SDSDAAGADD DDDATPSPPP HHHQHHHHQH HHQQQLVTRE LFPAGTGPPL PSPQHWAELG  60
FFRADPPRPH QQQPDIRILP HPHQHPHATP PVAPPPPVQP QPAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM  180
KQMKSLSKEE FVHVLRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC  240
NGREAVTNFE PSTYDGELLT EVSTEVAEVD LNLSISQPAS QSPKRDKSCL GLQLHHGSFE  300
GSESKKTKST SSRDLNRRPE GGAPSWAWKV TAAPPHTLPL PLFSSSSSSA AASSGFSNTA  360
TTAAPSASLR FDAPPSSSSS HHHRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52570.0embryo| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G024600.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957360.0FP095736.1 Phyllostachys edulis cDNA clone: bphyem202e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303266.10.0ethylene-responsive transcription factor RAP2-7 isoform X6
SwissprotB8AXC31e-131AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1Z5R1K10.0A0A1Z5R1K1_SORBI; Uncharacterized protein (Fragment)
STRINGSb09g002080.11e-162(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.29e-88related to AP2.7