PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G011300.1.p
Common NameSb09g001160, SORBIDRAFT_09g001160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 734aa    MW: 83012.2 Da    PI: 7.0849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.71.9e-1063557251374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+av+++d  la++l++++++++s dg+  qRla+yf+++L+arla+++s+l+ ++ +++ s   +++ l++++++  v+P
  Sobic.009G011300.1.p 355 LRSLLIHCAQAVAADDRLLASELIKKIRQHSSRDGECCQRLAFYFVNGLEARLAGTGSQLFPKMLAKRIS---EDDMLKVYNFYLAVCP 440
                           689****************************************************999999888888887...8999************ PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +++ s+  aNq+I e  +g++rvHiiDf++  G+QWp+L+q + ++ + pp+lRiTg++ p++g    e++e+tg+ La++A+  +vpf
  Sobic.009G011300.1.p 441 FHRASYTFANQTIIETSAGHSRVHIIDFGVYTGFQWPSLIQLFGDQ-GVPPRLRITGIEVPRPGfsPLENIERTGKLLADYANMYKVPF 528
                           ********************************************95.889*************99999********************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           +++  + +r ed+++e+L+++++E+l++n+ +++++l de+v+++s+rd+vLk++++++Pkv+++   + +++s+ F++rf e l +ys
  Sobic.009G011300.1.p 529 QYQG-IYSRYEDIQIEDLNIEEDEVLIINCLYRMKNLGDETVAMDSARDRVLKIMRRMNPKVFIFGILNGSYSSPFFVTRFKELLFHYS 616
                           ****.799********************************************************************************* PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           +lfd+l+++++r +e+r+ +E  +lgrei nv+ace a+r+er et+++W++r  ++GF+++pl+  ++k++ l+ ++++ + +  +e+
  Sobic.009G011300.1.p 617 SLFDMLDVNASRGNEARKLLEGGILGREILNVIACESADRIERPETYQQWQARCLKVGFEQLPLDPAIMKSMLLMKKEFYHEDFVADED 705
                           ********************************************************************************999****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           sg+l++gWk+r L+++S W+
  Sobic.009G011300.1.p 706 SGWLLQGWKGRVLYALSKWK 725
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.909329705IPR005202Transcription factor GRAS
PfamPF035146.6E-104355725IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MRIESPFDDL YTITTPGQRQ DGFSTSSSQQ QLTLYDQRLC DPQFFSQLTN ESNMQFSGVV  60
TIPGMYNVSS NLGQNHIQIP TGVSPDYQMV RPNNALHHIS QILMEDIDDR VGSHEGEAAL  120
QAAEKSFHGI LEQVYPLSLE WSPLHHSGEA GDGPGEGSNS YHKRPRRSSF TTDIFSNSML  180
QSLQAPLSPY SYGRSSFQPY QPLASTGRAS RFGFPALQIR REAKDAKGFD KMVIHLVGDK  240
LSICRLTTAK AKEVAGKSKY AIFQISDPRN NPYIQDLDNR EGWGKNCTIT CEINHNDKLD  300
SVLLCYGPDC FNETARLRDM AAKEASKNSP KGESKSTAQQ KSRGTRQLKK EVVDLRSLLI  360
HCAQAVAADD RLLASELIKK IRQHSSRDGE CCQRLAFYFV NGLEARLAGT GSQLFPKMLA  420
KRISEDDMLK VYNFYLAVCP FHRASYTFAN QTIIETSAGH SRVHIIDFGV YTGFQWPSLI  480
QLFGDQGVPP RLRITGIEVP RPGFSPLENI ERTGKLLADY ANMYKVPFQY QGIYSRYEDI  540
QIEDLNIEED EVLIINCLYR MKNLGDETVA MDSARDRVLK IMRRMNPKVF IFGILNGSYS  600
SPFFVTRFKE LLFHYSSLFD MLDVNASRGN EARKLLEGGI LGREILNVIA CESADRIERP  660
ETYQQWQARC LKVGFEQLPL DPAIMKSMLL MKKEFYHEDF VADEDSGWLL QGWKGRVLYA  720
LSKWKINESC ADQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-493597258375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G011300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276930.0KJ727693.1 Zea mays clone pUT5632 GRAS transcription factor (GRAS57) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650262.10.0scarecrow-like protein 9
TrEMBLC5YYG80.0C5YYG8_SORBI; Uncharacterized protein
STRINGSb09g001160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Representative plantOGRP1995022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-146GRAS family protein