PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G011100.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 627aa MW: 71176.9 Da PI: 6.7903 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 374 | 1.9e-114 | 252 | 622 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l+ lL++cA+a+ss+++ a++lL+++++++sp+gd +qRla yf+ AL+ar+a+++s++y++l +++ts + l+a++lf +sP Sobic.009G011100.5.p 252 LRALLIQCAQAISSNNHPFASELLKKIRHHSSPYGDGFQRLAIYFADALEARVAGTGSQMYQKLVVKQTS---CLDMLKAYSLFIAASP 337 5789*****************************************************************9...9*************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 ++++++ N++I++ + g rvHiiDf+i G+QWp+L+q La+R++gpp+lRiTg++ pe+g +++eetg+rLa++A+ ++vpf Sobic.009G011100.5.p 338 FVRVAYYFGNKTIVDVLGGRPRVHIIDFGILFGFQWPSLIQRLAKREGGPPQLRITGINVPETGfrPCKTIEETGKRLAEYARMFNVPF 426 **************************************************************999999********************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +++ va+r+ed+ + +L+++++E+l+Vn+ +++++l de+ +++s+rd+vL+++k+++P+v+++ + ++s+ Fl rf eal yys Sobic.009G011100.5.p 427 QYQG-VASRWEDIYIPDLNIDKDEVLIVNCLHKMKNLGDETEDIDSARDRVLRIMKRMNPNVLIIGVMNGLYSSPFFLPRFREALFYYS 514 ****.7*********************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 + fd+l++++++++e+ri +Er llg ++ nvvacegaer+er e++++W+ r+ +aGFk++p+++++ k+ + +++d + ++e+ Sobic.009G011100.5.p 515 SQFDMLNSTVAQNHEARILIERDLLGADVFNVVACEGAERIERPESYKQWQVRILKAGFKQLPVNQTILKSSLDRKELYHED-FVIDED 602 ***********************************************************************99999999966.****** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 sg+l++gWk+r + ++S+W+ Sobic.009G011100.5.p 603 SGWLLQGWKGRIMHALSSWK 622 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.568 | 226 | 603 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.6E-112 | 252 | 622 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MDNPEYCEIN SNITLNYVNQ LLMEESADEN ISTYKHHDAL QAMEKPFYDI LGKAYPSSPK 60 QTVINSGSQS NFPDDINNNY HDLECSGSSV SDILGCKAVR LIDIDGGSEL CNVVLQFNRT 120 AEEARKLVPS IEKLVVDPES NGLSSSKQTI EATIGQHSKH TNKIRSHPHV DLELVERRNS 180 KHSAISTSEI IRDEIFDRVL LCDEQYHCDV AHLREMKAKE ANISLQYVRN TGSAQGKEKS 240 QGKKQEKEEV DLRALLIQCA QAISSNNHPF ASELLKKIRH HSSPYGDGFQ RLAIYFADAL 300 EARVAGTGSQ MYQKLVVKQT SCLDMLKAYS LFIAASPFVR VAYYFGNKTI VDVLGGRPRV 360 HIIDFGILFG FQWPSLIQRL AKREGGPPQL RITGINVPET GFRPCKTIEE TGKRLAEYAR 420 MFNVPFQYQG VASRWEDIYI PDLNIDKDEV LIVNCLHKMK NLGDETEDID SARDRVLRIM 480 KRMNPNVLII GVMNGLYSSP FFLPRFREAL FYYSSQFDML NSTVAQNHEA RILIERDLLG 540 ADVFNVVACE GAERIERPES YKQWQVRILK AGFKQLPVNQ TILKSSLDRK ELYHEDFVID 600 EDSGWLLQGW KGRIMHALSS WKRKDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-56 | 237 | 621 | 4 | 378 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G011100.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728016 | 0.0 | KJ728016.1 Zea mays clone pUT6152 GRAS transcription factor (GRAS6) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440450.2 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1B6P5S1 | 0.0 | A0A1B6P5S1_SORBI; Uncharacterized protein | ||||
STRING | Sb09g001140.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-162 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G011100.5.p |