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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G011100.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 627aa MW: 71176.9 Da PI: 6.7903 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G011100.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 374 | 1.9e-114 | 252 | 622 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
l+ lL++cA+a+ss+++ a++lL+++++++sp+gd +qRla yf+ AL+ar+a+++s++y++l +++ts + l+a++lf +sP
Sobic.009G011100.2.p 252 LRALLIQCAQAISSNNHPFASELLKKIRHHSSPYGDGFQRLAIYFADALEARVAGTGSQMYQKLVVKQTS---CLDMLKAYSLFIAASP 337
5789*****************************************************************9...9*************** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
++++++ N++I++ + g rvHiiDf+i G+QWp+L+q La+R++gpp+lRiTg++ pe+g +++eetg+rLa++A+ ++vpf
Sobic.009G011100.2.p 338 FVRVAYYFGNKTIVDVLGGRPRVHIIDFGILFGFQWPSLIQRLAKREGGPPQLRITGINVPETGfrPCKTIEETGKRLAEYARMFNVPF 426
**************************************************************999999********************* PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
+++ va+r+ed+ + +L+++++E+l+Vn+ +++++l de+ +++s+rd+vL+++k+++P+v+++ + ++s+ Fl rf eal yys
Sobic.009G011100.2.p 427 QYQG-VASRWEDIYIPDLNIDKDEVLIVNCLHKMKNLGDETEDIDSARDRVLRIMKRMNPNVLIIGVMNGLYSSPFFLPRFREALFYYS 514
****.7*********************************************************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
+ fd+l++++++++e+ri +Er llg ++ nvvacegaer+er e++++W+ r+ +aGFk++p+++++ k+ + +++d + ++e+
Sobic.009G011100.2.p 515 SQFDMLNSTVAQNHEARILIERDLLGADVFNVVACEGAERIERPESYKQWQVRILKAGFKQLPVNQTILKSSLDRKELYHED-FVIDED 602
***********************************************************************99999999966.****** PP
GRAS 355 sgslvlgWkdrpLvsvSaWr 374
sg+l++gWk+r + ++S+W+
Sobic.009G011100.2.p 603 SGWLLQGWKGRIMHALSSWK 622
*******************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 627 aa
Download sequence Send
to blast |
MDNPEYCEIN SNITLNYVNQ LLMEESADEN ISTYKHHDAL QAMEKPFYDI LGKAYPSSPK 60 QTVINSGSQS NFPDDINNNY HDLECSGSSV SDILGCKAVR LIDIDGGSEL CNVVLQFNRT 120 AEEARKLVPS IEKLVVDPES NGLSSSKQTI EATIGQHSKH TNKIRSHPHV DLELVERRNS 180 KHSAISTSEI IRDEIFDRVL LCDEQYHCDV AHLREMKAKE ANISLQYVRN TGSAQGKEKS 240 QGKKQEKEEV DLRALLIQCA QAISSNNHPF ASELLKKIRH HSSPYGDGFQ RLAIYFADAL 300 EARVAGTGSQ MYQKLVVKQT SCLDMLKAYS LFIAASPFVR VAYYFGNKTI VDVLGGRPRV 360 HIIDFGILFG FQWPSLIQRL AKREGGPPQL RITGINVPET GFRPCKTIEE TGKRLAEYAR 420 MFNVPFQYQG VASRWEDIYI PDLNIDKDEV LIVNCLHKMK NLGDETEDID SARDRVLRIM 480 KRMNPNVLII GVMNGLYSSP FFLPRFREAL FYYSSQFDML NSTVAQNHEA RILIERDLLG 540 ADVFNVVACE GAERIERPES YKQWQVRILK AGFKQLPVNQ TILKSSLDRK ELYHEDFVID 600 EDSGWLLQGW KGRIMHALSS WKRKDS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728016 | 0.0 | KJ728016.1 Zea mays clone pUT6152 GRAS transcription factor (GRAS6) gene, partial cds. |