PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G187001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 26392.9 Da PI: 8.2603 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6e-15 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l ++++++Gg W + +r+ g++R++k+c++rw++yl Sobic.008G187001.1.p 14 RGPWSSEEDAQLRCYIERHGGAagGWMALPRKAGLRRCGKSCRLRWLNYL 63 89******************9899************************97 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 70 | 112 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed + + + G++ W++Ia+++ gRt++ +k++w++ Sobic.008G187001.1.p 70 GGFSPDEDRVICALYAAVGSR-WSLIAAHLH-GRTDNGVKNYWNT 112 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.771 | 9 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-24 | 12 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-9 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-13 | 14 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 15 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.15E-7 | 16 | 63 | No hit | No description |
PROSITE profile | PS51294 | 13.617 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-8 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-9 | 70 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.12E-6 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRSPCCDKA TVKRGPWSSE EDAQLRCYIE RHGGAAGGWM ALPRKAGLRR CGKSCRLRWL 60 NYLRPGVRHG GFSPDEDRVI CALYAAVGSR WSLIAAHLHG RTDNGVKNYW NTRLKKRFQL 120 LFAGMPPPPA VPVPLPWTTG LLPCGTGGGV DDTRIIGAGG GGNGTDDDMV TGRTNDVVVV 180 SQRPAETSSS SCGPAATTEL DEMFRSMGTT GGDHSDMCQS STEIETASWY HCQYLGSMPY 240 MYW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 14 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G187001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964229.2 | 1e-110 | transcription factor RAX1 | ||||
Swissprot | Q9SJL7 | 3e-63 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A1Z5R8F4 | 1e-179 | A0A1Z5R8F4_SORBI; Uncharacterized protein | ||||
STRING | OPUNC12G18070.1 | 3e-66 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 5e-63 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G187001.1.p |
Publications ? help Back to Top | |||
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