PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G183900.1.p
Common NameSb08g022560, SORBIDRAFT_08g022560
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 305aa    MW: 35419.5 Da    PI: 7.9129
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G183900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49311612128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                            pGfrFhPtd+elv +yLk+kve+k++++ ++i+e+diyk++PwdLp+        +++k++yfF+ r +ky+++ r+nr+t sg+Wka
  Sobic.008G183900.1.p  31 FPGFRFHPTDQELVGFYLKRKVEKKSFSI-DIIREIDIYKHDPWDLPNeardmVQGTGDKDCYFFCLRGRKYRNSIRPNRVTGSGFWKA 118
                           69***************************.99**************964676433348889**************************** PP

                   NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           tg dk++++  ge vglkk+Lv+y+g+a +g+ktdW+mhe+rl
  Sobic.008G183900.1.p 119 TGIDKPIHDGAGECVGLKKSLVYYRGSAGRGTKTDWMMHEFRL 161
                           *****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5230183IPR003441NAC domain
PROSITE profilePS5100551.0530183IPR003441NAC domain
PfamPF023653.0E-2432161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEEKKPSQR ITKKENGGRA DDRNEEDDLV FPGFRFHPTD QELVGFYLKR KVEKKSFSID  60
IIREIDIYKH DPWDLPNEAR DMVQGTGDKD CYFFCLRGRK YRNSIRPNRV TGSGFWKATG  120
IDKPIHDGAG ECVGLKKSLV YYRGSAGRGT KTDWMMHEFR LPSTELVELH DAEIWTICRI  180
FKRSTSYNRR CQQQQKQEQG SKRNHHQQQQ LQYYYDYYRY HQQQQHHYFH SSEAAYAATE  240
HHQPFLLRGF HGSSPSSTEM TVSSGFMGVG PPLPPSTSNL GWSDVTCLQD SGSTWDELGR  300
IMEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-473218619168NO APICAL MERISTEM PROTEIN
1ut4_B6e-473218619168NO APICAL MERISTEM PROTEIN
1ut7_A6e-473218619168NO APICAL MERISTEM PROTEIN
1ut7_B6e-473218619168NO APICAL MERISTEM PROTEIN
3swm_A5e-473218622171NAC domain-containing protein 19
3swm_B5e-473218622171NAC domain-containing protein 19
3swm_C5e-473218622171NAC domain-containing protein 19
3swm_D5e-473218622171NAC domain-containing protein 19
3swp_A5e-473218622171NAC domain-containing protein 19
3swp_B5e-473218622171NAC domain-containing protein 19
3swp_C5e-473218622171NAC domain-containing protein 19
3swp_D5e-473218622171NAC domain-containing protein 19
4dul_A6e-473218619168NAC domain-containing protein 19
4dul_B6e-473218619168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G183900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443628.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK554e-78NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLC5YSW00.0C5YSW0_SORBI; Uncharacterized protein
STRINGSb08g022560.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-79NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]