PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G174650.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-YA | ||||||||
Protein Properties | Length: 339aa MW: 36625.4 Da PI: 9.091 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.9 | 2.5e-31 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p+YVNaKQy++I++RR +Rak+e+e++l k+rkpylheSRh+hAlrRpRgsgGrF Sobic.008G174650.8.p 172 EAPIYVNAKQYDAIMRRRRARAKAERENRL-VKARKPYLHESRHQHALRRPRGSGGRF 228 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-35 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.881 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-23 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.5E-28 | 174 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-23 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MMSFRSTTHD GFVGHAAVNG AGAPVPWWAG APMLCGEPLG LGRPVVAAFS PEDHCRDGRF 60 QVLQGPPLDP LVPSLKAPVA HQQQTEKGLS AELLNLSVAH QGKGKKGSEH SATVALQSPF 120 AIYNGRFELG LGQSMISADN SYADQHYGLI SPYPMGATPG GRMLIPLNMP TEAPIYVNAK 180 QYDAIMRRRR ARAKAERENR LVKARKPYLH ESRHQHALRR PRGSGGRFLN TKKESDGKDA 240 GGGSKATFSN PLMRQVASPS SEIQHSDLGN PSSVSSLSGS EVSSMYDRED MDHYHSFDHL 300 RTPFFTPLTS IMDGDHGVVG NPFKWAAASE VCCDLLKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-18 | 172 | 230 | 2 | 61 | HAPB protein |
4g92_A | 2e-18 | 172 | 230 | 2 | 61 | HAPB protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1253 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G174650.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033811 | 0.0 | BT033811.1 Zea mays full-length cDNA clone ZM_BFc0155E11 mRNA, complete cds. | |||
GenBank | BT067827 | 0.0 | BT067827.1 Zea mays full-length cDNA clone ZM_BFc0168D11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443581.2 | 0.0 | uncharacterized protein LOC8071483 isoform X2 | ||||
TrEMBL | A0A1Z5R7A8 | 0.0 | A0A1Z5R7A8_SORBI; Uncharacterized protein | ||||
STRING | Sb08g021910.1 | 1e-149 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 3e-27 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G174650.8.p |