PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G168300.1.p

Common Name

Sb08g021370, SORBIDRAFT_08g021370

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NF-YA

Protein Properties

Length: 214aa MW: 23173.4 Da PI: 8.697

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G168300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.1	1.2e-32	108	164	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl k+rkpylheSRh+hAl+R+Rg gGrF Sobic.008G168300.1.p 108 EEPVYVNAKQYNAILRRRQSRAKAESERKL-VKGRKPYLHESRHQHALKRARGAGGRF 164 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.0E-35	106	167	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.53	107	167	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.5E-27	109	164	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	110	132	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	112	132	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	141	164	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTSVVQSVSG DHRAEDQHHQ KKQAEPGDQQ EAPVTSSDSQ PTVGTPSTDY VAPYAPHDMS 60 HAMGQYAYPN IDPYYGSLYA AYGGQPLMHP PLVGMHPAGL PLPTDAIEEP VYVNAKQYNA 120 ILRRRQSRAK AESERKLVKG RKPYLHESRH QHALKRARGA GGRFLNSKSD DKEENSDSSH 180 KEKQNGVAPN NGQPSTPPSP NGASSANQAG SRE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	107	171	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.3363	0.0	embryo\| shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G168300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969919	0.0	EU969919.1 Zea mays clone 337251 nuclear transcription factor Y subunit A-7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443549.1	1e-155	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	9e-45	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	C5YRY5	1e-154	C5YRY5_SORBI; Uncharacterized protein
STRING	Sb08g021370.1	1e-155	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	7e-40	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Sobic.008G168300.1.p
Entrez Gene	8070158

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]