PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G165000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LSD | ||||||||
Protein Properties | Length: 262aa MW: 27626.3 Da PI: 8.9076 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.2e-13 | 91 | 115 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YPrGApsV+Ca+C++V Sobic.008G165000.1.p 91 CHGCRTVLLYPRGAPSVCCAVCHAV 115 ************************9 PP | |||||||
2 | zf-LSD1 | 40.1 | 5.9e-13 | 130 | 154 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+r A+ VRC++CdtV Sobic.008G165000.1.p 130 CGGCQTLLMYTRSATTVRCSCCDTV 154 ************************9 PP | |||||||
3 | zf-LSD1 | 50.1 | 4.5e-16 | 168 | 192 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Sobic.008G165000.1.p 168 CGQCQTVLMYPYGAPSVKCAICNFI 192 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.7E-13 | 88 | 118 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.8E-11 | 91 | 115 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.8E-13 | 128 | 157 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-10 | 130 | 154 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.7E-11 | 165 | 194 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-14 | 168 | 192 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MFRCLAGGMG RVRRSVAGSI NRAGEHGRSV WGNRMACAGF GIGRSWRGLF FSPDGAKLIE 60 TLIVDVCWCK KNRIELGVGL GWDSMQSQIV CHGCRTVLLY PRGAPSVCCA VCHAVTNVPP 120 PAIEMARLIC GGCQTLLMYT RSATTVRCSC CDTVNLVRPV SSIAHVNCGQ CQTVLMYPYG 180 APSVKCAICN FITNVGGVTP VRPLPPALPA SSGNSYSIPS TSVPMNQSQN VTVVVENPMT 240 VDDKGKLVSN VVVGVTSGGK K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.6388 | 0.0 | callus| leaf| pollen| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G165000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN983231 | 0.0 | JN983231.1 Miscanthus sinensis clone MSIL000019 putative zinc finger LOL2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132871.1 | 1e-125 | uncharacterized protein LOC100194364 | ||||
Swissprot | Q2QMB3 | 4e-94 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A1B6PE69 | 0.0 | A0A1B6PE69_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G114613_P02 | 1e-125 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-54 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G165000.1.p |
Publications ? help Back to Top | |||
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