PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G153801.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 164aa MW: 17556.1 Da PI: 9.4755 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.4 | 2.6e-08 | 73 | 101 | 3 | 34 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskap 34 +ah+ E+rRR +i++++ +L++l+P + p Sobic.008G153801.2.p 73 EAHSLTEKRRRLKIKEKLKTLQQLVPGC---P 101 68************************97...3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.67E-8 | 62 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.35 | 70 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-9 | 73 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.46E-6 | 73 | 103 | No hit | No description |
Pfam | PF00010 | 6.1E-6 | 73 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MASWLFPIVC GAGEEVAGGG DAVVVAGRRA WVVDDDQMVP SGKGLESSSD HKLQEKRKTS 60 STGRGKRSHH HAEAHSLTEK RRRLKIKEKL KTLQQLVPGC PNNAMSGMKP TSVAVCPVVQ 120 QAPCLPCWQG GTSVQRDGSW ALPSYSSVLP PCFHGFTFTA MQS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 83 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G153801.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806978.1 | 1e-14 | putative transcription factor bHLH056 | ||||
TrEMBL | A0A1Z5R807 | 1e-117 | A0A1Z5R807_SORBI; Uncharacterized protein | ||||
STRING | Sb08g020280.1 | 2e-68 | (Sorghum bicolor) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G153801.2.p |