PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G149400.1.p
Common NameSb08g019930, SORBIDRAFT_08g019930
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 368aa    MW: 42270.2 Da    PI: 8.7641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G149400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.5e-1741128298
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           fk +     +++g +++p kf+++ +g+   +k   l+ +sg++W v++  +k+ ++ ++++GW +F++a++L+e+D v+F+ +g+ +f
  Sobic.008G149400.1.p  41 FKPM--TGDFAQG-ISIPEKFVSNLNGQ--ITKVFNLKAPSGETWLVNV--TKNADELLFKSGWDDFARAHELQENDLVIFTCSGNCSF 122
                           5555..4445555.9*******877877..6678***************..*******************************9999888 PP

                           ..EEEEE- CS
                    B3  91 elvvkvfr 98 
                              v +++
  Sobic.008G149400.1.p 123 --DVLILD 128
                           ..676666 PP
2B347.24.1e-15268357999
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                              k+++l++   fa+eh  +++++  l l+  + ++W vk+ y  + ++ +  +  W +Fv++n+L+   ++vF+l++  +++++vv+
  Sobic.008G149400.1.p 268 VGYKNNMLTIHHGFAAEHL-EERSHEILLLRPNRKEKWYVKYYYASHTRGfHCCR--WVKFVRDNRLRKDHICVFELMKGaKRTTMVVH 353
                           34577999**********4.334444555555788*******8855555526666..*******************99887******** PP

                           EE-S CS
                    B3  96 vfrk 99 
                           v+rk
  Sobic.008G149400.1.p 354 VLRK 357
                           *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2135132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-2135132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.25337130IPR003340B3 DNA binding domain
CDDcd100171.27E-1739128No hitNo description
SMARTSM010197.2E-1040130IPR003340B3 DNA binding domain
PfamPF023623.7E-1442125IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17252356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-18252356IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-13257356No hitNo description
SMARTSM010192.0E-8259358IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391260358IPR003340B3 DNA binding domain
PfamPF023625.8E-13265357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQLTRECRLN KMAPHLRCES CRKWQEHCYQ EHMARERVSF FKPMTGDFAQ GISIPEKFVS  60
NLNGQITKVF NLKAPSGETW LVNVTKNADE LLFKSGWDDF ARAHELQEND LVIFTCSGNC  120
SFDVLILDSS GCEKVSCFFT TKKGPCMHKH FNGRAHQHTE HRMFSDSEDL GMPLRLVASS  180
HRASTSKKGG KTEPRKEPES PINSNYYIKQ EAISGEEQSD EDWLADPSYY YSKSANILTG  240
GERDQISSLA LIQPGNPAFV AVLHKTHVGY KNNMLTIHHG FAAEHLEERS HEILLLRPNR  300
KEKWYVKYYY ASHTRGFHCC RWVKFVRDNR LRKDHICVFE LMKGAKRTTM VVHVLRKVDN  360
GRIVLVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G149400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442429.20.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-142Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A1B6PDS90.0A0A1B6PDS9_SORBI; Uncharacterized protein
STRINGSb08g019930.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-29B3 family protein